It is necessary for app le genomic research and breeding to find outmalic acid genetic characteristics. In this research, SSR marker linked to acid /low-acid trait in app le fruitwas identified from 140 SSR primer pairs, materialed by 91 F1 population hybrid from the intraspecific cross between apple cultivar‘Dongguang’ and ‘Fuji’. Of 140 SSR primer pairs, only p rimer SDY085 produced a polymorphic band linked to acid trait, and the linkage distance was 8.89 cM. Also, the titrated acid and malic acid in different developmental stages were determined. The SSR marker analysis, coupled with the change of the total acid and malic acid contents, revealed that acid/low-acid trait was governed by a major gene and acid trait was complete dominant.