Identification and Expression Pattern Analysis of DUF966 Gene Family Members in Ginger

doi:10.16420/j.issn.0513-353x.2023-0422

Acta Horticulturae Sinica ›› 2024, Vol. 51 ›› Issue (9): 2031-2047.doi: 10.16420/j.issn.0513-353x.2023-0422

• Genetic & Breeding · Germplasm Resources · Molecular Biology • Previous Articles Next Articles

Identification and Expression Pattern Analysis of DUF966 Gene Family Members in Ginger

GUO Changquan¹, LI Danqi¹, HUI Xinran¹, ZHENG Jingya¹, HOU Menglu¹, ZHU Yongxing¹^,²^,^*()

¹ College of Horticulture and Gardening，Yangtze University，Jingzhou，Hubei 434025，China
² Xiangxin Crop Research Institute，Yangtze University，Jingzhou，Hubei 434025，China

Received:2024-04-03 Revised:2024-06-17 Online:2024-09-25 Published:2024-09-19
Contact: ZHU Yongxing

Abstract

Abstract:

In order to understand the function of DUF966 family genes（ZoDUF966）in ginger，the biological information method was used to systematically identify them. A total of 11 ZoDUF966 were identified and classified into groups a，b and c，including 5，4 and 2 members，respectively. All ZoDUF966 proteins were hydrophilic proteins and localized in the nucleus. Except for ZoDUF966_1b，ZoDUF966_3b and ZoDUF966_11a，the other 8 proteins were alkaline proteins. In the secondary structure of the protein，α-helix and random coil are dominant，and there are some differences in the tertiary structure. Eleven ZoDUF966 were distributed on six chromosomes，except for four and three genes on chromosomes 6 and 16，respectively，and only one gene on each of the other four chromosomes. The promoter sequence of ZoDUF966 contains cis-acting elements related to light response，stress，growth and development，and plant hormones. Gene expression analysis based on transcriptome sequencing data showed that the expression of ZoDUF966 was different in different growth periods，different tissues，biotic and abiotic stresses. Among them，ZoDUF966_6c responded to low temperature stress，and ZoDUF966_9b was highly up-regulated after inoculation with Fusarium solani. qRT-PCR results showed that ZoDUF966 responded to drought，flooding and salt stresses. Under drought stress，ZoDUF966_6c/10a/11a in roots and ZoDUF966_7a/11a in rhizomes were significantly up-regulated，while ZoDUF966_1b/4b and ZoDUF966_8a/1a in rhizomes were significantly down-regulated. Under salt stress，ZoDUF966_9b and ZoDUF966_7a were significantly up-regulated in roots，and ZoDUF966_5a was significantly down-regulated in roots. Under waterlogging stress，ZoDUF966_7a and ZoDUF966_10a were significantly up-regulated in rhizome，while ZoDUF966_1b in leaves and ZoDUF966_11a in roots were significantly down-regulated.

Key words: ginger, DUF966, bioinformatics, expression analysis

GUO Changquan, LI Danqi, HUI Xinran, ZHENG Jingya, HOU Menglu, ZHU Yongxing. Identification and Expression Pattern Analysis of DUF966 Gene Family Members in Ginger[J]. Acta Horticulturae Sinica, 2024, 51(9): 2031-2047.

Figures/Tables 12

References 45

[1]	Bateman A, Coggill P, Finn R D. 2010. DUFs:families in search of function. Acta Crystallographica Section F,66:1148-1152.
[2]	Burkhardt A, Day B. 2016. Transcriptome and small RNAome dynamics during a resistant and susceptible interaction between cucumber and downy mildew. The Plant Genome, 9 (1):1-19.
[3]	Cao Yunpeng, Fang Zhi, Li Shumei, Yan Chongchong, Ding Qingqing, Cheng Xi, Lin Yi, Guo Ning, Cai Yongping. 2015. Genome wide identification and analyses of 4CL gene families in Pyrus bretschenideri Rehd. Hereditas, 37 (7):711-719. (in Chinese)
	曹运鹏, 方志, 李姝妹, 闫冲冲, 丁庆庆, 程曦, 林毅, 郭宁, 蔡永萍. 2015. 砀山酥梨4CL基因家族的全基因组鉴定与分析. 遗传, 37 (7):711-719.
[4]	Chen C J, Chen H, Zhang Y, Thomas H R, Frank M H, He Y H, Xia R. 2020. TBtools:an integrative toolkit developed for interactive analyses of big biological data. Molecular Plant, 13 (8):1194-1202.
[5]	Chen Juan. 2007. Effects of drought stress and exogenous ABA on ginger growth and rhizosphere effects[M. D. Dissertation]. Chengdu: Sichuan University. (in Chinese)
	陈娟. 2007. 干旱胁迫和外源ABA对生姜生长和根际效应的影响研究[硕士论文]. 成都: 四川大学.
[6]	Dong Y T, Li C, Zhang Y, He Q L, Daud M K, Chen J H, Zhu S J. 2016. Glutathione S-transferase gene family in Gossypium raimondii and G. arboretum:comparative genomic study and their expression under salt stress. Frontiers in Plant Science,7:193.
[7]	Guo C M, Luo C K, Guo L J, Li M, Guo X L, Zhang Y X, Wang L J, Chen L. 2016. OsSIDP366,a DUF 1644 gene,positively regulates responses to drought and salt stresses in rice. Journal of Integrative Plant Biology, 58 (5):492-502.
[8]	Huang M J, Xing H T, Li Z X, Li H L, Wu L, Jiang Y S. 2021a. Identification and expression profile of the soil moisture and Ralstonia solanacearum response CYPome in ginger(Zingiber officinale). Peer J,9:11755.
[9]	Huang W D, He Y Q, Yang L, Lu C, Zhu Y X, Sun C, Ma D F, Yin J L. 2021b. Genome-wide analysis of growth-regulating factors(GRFs)in Triticum aestivum. Peer J,9:10701.
[10]	Jiang Y S, Huang M J, Zhang M X, Lan J B, WangW X, Tao X, Liu Y Q. 2018. Transcriptome analysis provides novel insights into high-soil-moisture-elevated susceptibility to Ralstonia solanacearum infection in ginger(Zingiber officinale Roscoe cv. Southwest). Plant Physiology and Biochemistry,132:547-556.
[11]	Kim S J, Ryu M Y, Kim W T. 2012. Suppression of Arabidopsis RING-DUF 1117 E3 ubiquitin ligases,AtRDUF1 and AtRDUF2,reduces tolerance to ABA-mediated drought stress. Biochemical and Biophysical Research Communications, 420 (1):141-147.
[12]	Li G, Ma J W, Yin J L, Guo F L, Xi K Y, Yang P H, Cai X D, Jia Q, Li L, Liu Y Q, Zhu Y X. 2022a. Identification of reference genes for reverse transcription-quantitative PCR analysis of ginger under abiotic stress and for postharvest biology studies. Frontiers in Plant Science,13:1587.
[13]	Li H L, Wu L, Dong Z M, Jiang Y S, Jiang S J, Xing H T, Li Q, Liu G C, Tian S M, Wu Z Y, Bin W, Li Z X, Zhao P, Zhang Y, Tang J M, Xu J B, Huang K, Liu X, Zhang W L, Liao Q H, Ren Y, Huang X Z, Li Q Z, Li C Y, Wang Y, Xavier R B, Li H H, Liu Y, Wan T, Liu Q H, Zou Y, Jian J B, Xia Q Y, Liu Y W. 2021. Haplotype-resolved genome of diploid ginger(Zingiber officinale)and its unique gingerol biosynthetic pathway. Horticulture Research, 8 (1):242.
[14]	Li Qingqing, Li Dapeng, Li Dequan. 2010. The research progress in biosynthesis and regulation of jasmonates. Biotechnology Bulletin,(1):53-57,62. (in Chinese)
	李清清, 李大鹏, 李德全. 2010. 茉莉酸和茉莉酸甲酯生物合成及其调控机制. 生物技术通报,(1):53-57,62.
[15]	Li W C, Zhao S Q. 2012. Specific silencing of At1g13770 and At2g 23470 genes by artificial microRNAs in Arabidopsis thaliana. Hereditary, 34 (3):348-355.
[16]	Li Z Q, Wang C L, Wang K Y, Zhao J Y, Shao J R, Chen H, Zhou M L, Zhu X M. 2022b. Metal tolerance protein encoding gene family in Fagopyrum tartaricum:genome-wide identification,characterization and expression under multiple metal stresses. Plants, 11 (7):850.
[17]	Li Zhiqiang, Lie Shihui, Wang Xian, Xiang Li, Liu Enliang, Fang Furong. 2022. Genomen wide identification and bioinformatics of SOR family in barely. Plant Physiology Journal, 58 (8):1496-1506. (in Chinese)
	李志强, 聂石辉, 王仙, 向莉, 刘恩良, 方伏荣. 2022. 大麦SRO家族的全基因组鉴定及生物信息学分析. 植物生理学报, 58 (8):1496-1506.
[18]	Liu Longbo, Song Yunxian, Zhang Huijun, Yu Rugang, Zhu Qianzhi, Zheng Ke, Zheng Jie. 2021. Genome-wide identification and expression analysis of pomegranate GST gene family. Molecular Plant Breeding, 19 (16):5307-5317. (in Chinese)
	刘龙博, 宋运贤, 张慧君, 余如刚, 朱乾智, 郑珂, 郑洁. 2021. 石榴GST基因家族全基因组鉴定及表达分析. 分子植物育种, 19 (16):5307-5317.
[19]	Luo C K, Guo C M, Wang W J, Wang L J, Chen L. 2014. Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF 966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice. Plant Cell Reports, 33 (2):323-336.
[20]	Luo Chengke, Guo Chiming, Zhang Yuxia, Chen Jilin, Xiao Shimin, Chen Liang. 2013. Expression analysis a stress repressed gene OsRSR4 from DUF 966 family and generation of OsDSR4 overexpressing transgenic rice(Oryza sativa L. ssp. Japonica). Journal of Agricultural Biotechnology, 21 (11):1287-1294. (in Chinese)
	罗成科, 郭迟鸣, 张玉霞, 陈继林, 肖世民, 陈亮. 2013. DUF966家族中一个胁迫抑制基因OsDSR4的表达分析及超表达转基因水稻的获得. 农业生物技术学报, 21 (11):1287-1294.
[21]	Luo Chengke, Tian Lei. 2017. Bioinformatics analysis of rice DUF 966 gene family. Molecular Plant Breeding, 15 (12):4791-4796. (in Chinese)
	罗成科, 田蕾. 2017. 水稻DUF966基因家族的生物信息学分析. 分子植物育种, 15 (12):4791-4796.
[22]	Lynch M, Conery J S. 2000. The evolutionary fate and consequences of duplicate genes. Science, 290 (5494):1151-1155. doi: 10.1126/science.290.5494.1151 pmid: 11073452
[23]	Ma S F, Zhang Z Q, Long Y Q, Huo W Q, Zhang Y Z, Yang X Q, Zhang J, Li X Y, Du Q Y, Liu W, Yang D G, Ma X F. 2022. Evolutionary history and functional diversification of the JmjC domain-containing histone demethylase gene family in plants. Plants, 11 (8):1041.
[24]	Palmeros-Suárez P A, Massange-Sánchez J A, Sánchez-Segura L, Martínez-Gallardo N A, Espitia R E, Gómez-Leyva J F, Délano-Frier J P. 2017. AhDGR2,an amaranth abiotic stress-induced DUF 642 protein gene,modifies cell wall structure and composition and causes salt and ABA hyper-sensibility in transgenic Arabidopsis. Planta, 245 (3):623-640. doi: 10.1007/s00425-016-2635-y pmid: 27988887
[25]	Qin D D, Xie S, Liu G, Ni Z F, Yao Y Y, Sun Q X, Peng H R. 2013. Isolation and functional characterization of heat-stress responsive gene TaWTF1 from wheat. Chinese Bulletin of Botany,48:34-41.
[26]	Sharma H, Sharma A, Rajput R, Sidhu S, Dhillon H, Verma P C, Pandey A, Upadhyay S K. 2022. Molecular characterization,evolutionary analysis,and expression profiling of BOR genes in important cereals. Plants, 11 (7):911.
[27]	Shen L P, Zhong T, Wang L, Zhang Q Q, Jin H Y, Xu M L, Ye J R. 2019. Characterization the role of a UFC homolog,AtAuxRP3,in the regulation of Arabidopsis seedling growth and stress response. Journal of Plant Physiology,240:152990.
[28]	Tian J, Li Y, Hu Y, Zhong Q W, Yin J L, Zhu Y X. 2022. Mining the roles of cucumber DUF 966 genes in fruit development and stress response. Plants, 11 (19):2497.
[29]	Tirajoh A. 2005. Isolation and characterization of novel salt-responsive genes in tomato(Lycopersicon esculentum Mill.)roots. Simon Fraser University.
[30]	Thompson J D, Higgins D G, Gibson T J. 1994. CLUSTAL W:improving the sensitivity of progressive multiple sequence alignment through sequence weighting,position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22 (22):4673-4680. doi: 10.1093/nar/22.22.4673 pmid: 7984417
[31]	Varakumar S, Umesh K V, Singhal R S. 2017. Enhanced extraction of oleoresin from ginger(Zingiber officinale)rhizome powder using enzyme-assisted three phase partitioning. Food Chemistry,216:27-36.
[32]	Wang Lei, Xu Kun, Li Xiu. 2013. Research status and prospect of ginger germplasm resources and breeding. Chinese Vegetables,(16):1-6. (in Chinese)
	王磊, 徐坤, 李秀. 2013. 姜种质资源及育种研究现状与展望. 中国蔬菜,(16):1-6.
[33]	Wang Xiaojuan. 2014. Functional analysis of AtST39 and AtST39H in salt and drought stress[M. D. Dissertation]. Xiamen: Xiamen University. (in Chinese)
	王晓娟. 2014. AtST39和AtST39H在盐胁迫干旱胁迫中的功能研究[硕士论文]. 厦门: 厦门大学.
[34]	Xin Z, Mandaokar A, Chen J P, Last R, Browse J. 2007. Arabidopsis ESK1 encodes a novel regulator of freezing tolerance. The Plant Journal, 49 (5):786-799.
[35]	Xiong J Y, Chen D Y, Su T T, Shen Q F, Wu D Z, Zhang G P. 2022. Genome-wide identification,expression pattern and sequence variation analysis of SnRK family genes in barley. Plants, 11 (7):975.
[36]	Xu Yue, Chao Bili, Chen Zijing, Xu Kun. 2019. Effects of saline-alkali interaction stress on yield and quality of ginger and its mathematical model establishment. Chinese Vegetables,(12):41-45. (in Chinese)
	徐悦, 曹逼力, 陈子敬, 徐坤. 2019. 盐碱交互胁迫对生姜产量和品质的影响及其数学模型的建立. 中国蔬菜,(12):41-45.
[37]	Yang S Q, Li W Q, Miao H, Gan P F, Qiao L, Chang Y L, Shi C H, Chen K M. 2016. REL2,a gene encoding an unknown function protein which contains DUF630 and DUF 632 domains controls leaf rolling in rice. Rice, 9 (1):1-14.
[38]	Yang Y, Miao Y F, Zhong S W, Fang Q, Wang Y G, Dong B, Zhao H B. 2022. Genome-wide identification and expression analysis of XTH gene family during flower-opening stages in Osmanthus fragrans. Plants, 11 (8):1015.
[39]	Yin J L, Liu M Y, Ma D F, Wu J W, LI S L, Zhu Y X, Han B. 2018. Identification of circular RNAs and their targets during tomato fruit ripening. Postharvest Biology and Technology,136:90-98.
[40]	Zhang H M, Zhu J H, Gong Z Z, Zhu J K. 2022. Abiotic stress responses in plants. Nature Reviews Genetics, 23 (2):104-119.
[41]	Zhang P, Wang Y H, Wang J, Li Gang, Li S Y, Ma J W, Peng X Y, Yin J L, Liu Y Q, Zhu Y X. 2023. Transcriptomic and physiological analyses reveal changes in secondary metabolite and endogenous hormone in ginger(Zingiber officinale Rosc.)in response to postharvest chilling stress. Plant Physiology and Biochemistry,201:107799.
[42]	Zhang Y, Zhang F, Huang X Z. 2019. Characterization of an Arabidopsis thaliana DUF761-containing protein with a potential role in development and defense responses. Theoretical and Experimental Plant Physiology,31:303-316.
[43]	Zhao Shiyue, Ma Wenpei, Li Lin, Nie Hongfei, Ye Wenxiu, Li Guirong, Ji Wei. 2023. Identification and bioinformatics analysis of IDD gene family in Vitis vinifera. Molecular Plant Breeding, https://kns.cnki.net/kcms/detail/46.1068.S.20230328.1437.020.html. (in Chinese)
	赵士粤, 马文培, 黎霖, 聂鸿飞, 叶文秀, 李桂荣, 纪薇. 2023. 葡萄IDD基因家族鉴定及生物信息学分析. 分子植物育种, https://kns.cnki.net/kcms/detail/46.1068.S.20230328.1437.020.html.
[44]	Zhou X Y, Zhu X G, Shao W N, Song J H, Jiang W Q, He Q Y, Yin J L, Ma D F, Qiao Y L. 2020. Genome-wide mining of wheat DUF966 gene family provides new insights into salt stress responses. Frontiers in Plant Science,11:569838.
[45]	Zúñiga-Sánchez E, Soriano D, Martínez-Barajas E, Orozco-Segovia A, Gamboa-deBuen A. 2014. BIIDXI,the At4g32460 DUF 642 gene,is involved in pectin methyl esterase regulation during Arabidopsis thaliana seed germination and plant development. BMC Plant Biology, 14 (1):1-13.

基因ID GeneID	名称 Name	引物序列（5′-3′） Primer sequence
Maker00000492	ZoDUF966_1b	F：AGACAGTGCGGCAGTTCCT；R：CCGCCAGGTCGGTCTTAT
Maker00034379	ZoDUF966_4b	F：CGGATTCTGGACTTCTACTTCTC；R：CAATGTCTTTGGCTTCTCGTC
Maker00034617	ZoDUF966_5a	F：TGAGCAGGCTCTGCGTTTG；R：TCGCCTTCCAGAACACTAAGAT
Maker00037034	ZoDUF966_6c	F：CCAGAACAGCGGAGCAATAA；R：GGTGGCAGTAGCGAGGGTT
Maker00037143	ZoDUF966_7.a	F：GCACCCGCACTTCATCGA；R：AATACAAGGCGGCCATCC
Maker00039356	ZoDUF966_8a	F：TGCCTTTGCGGCGGACTA；R：GCCTTGGGACGATTGCTC
Maker00055807	ZoDUF966_9b	F：TGTCGTCGTCGAGTTCGG；R：CCCGTGGTGGTCCTTCAT
Maker00065349	ZoDUF966_10a	F：ATCTTCGGTCGGGTTGGT；R：TGTACTCGTCCGGGTTCG
Maker00071931	ZoDUF966_11a	F：CCCGTCATCACCAGCAGA；R：CAACAACGCGGACATTCG
ACT	RBP	F：CCTATGAAGCGTAGAAACACAAG；R：GGAAGGACAACATCCCAAATC

基因ID GeneID	名称 Name	引物序列（5′-3′） Primer sequence
Maker00000492	ZoDUF966_1b	F：AGACAGTGCGGCAGTTCCT；R：CCGCCAGGTCGGTCTTAT
Maker00034379	ZoDUF966_4b	F：CGGATTCTGGACTTCTACTTCTC；R：CAATGTCTTTGGCTTCTCGTC
Maker00034617	ZoDUF966_5a	F：TGAGCAGGCTCTGCGTTTG；R：TCGCCTTCCAGAACACTAAGAT
Maker00037034	ZoDUF966_6c	F：CCAGAACAGCGGAGCAATAA；R：GGTGGCAGTAGCGAGGGTT
Maker00037143	ZoDUF966_7.a	F：GCACCCGCACTTCATCGA；R：AATACAAGGCGGCCATCC
Maker00039356	ZoDUF966_8a	F：TGCCTTTGCGGCGGACTA；R：GCCTTGGGACGATTGCTC
Maker00055807	ZoDUF966_9b	F：TGTCGTCGTCGAGTTCGG；R：CCCGTGGTGGTCCTTCAT
Maker00065349	ZoDUF966_10a	F：ATCTTCGGTCGGGTTGGT；R：TGTACTCGTCCGGGTTCG
Maker00071931	ZoDUF966_11a	F：CCCGTCATCACCAGCAGA；R：CAACAACGCGGACATTCG
ACT	RBP	F：CCTATGAAGCGTAGAAACACAAG；R：GGAAGGACAACATCCCAAATC

命名 Name	基因ID Gene ID	长度/aa Length	分子量/kD Molecular weight	pI	不稳定指数 Instability index	亲水性Grand average of hydropathicity	α螺旋/% Alpha- helix	β折叠/% Beta- pleated sheet	无规则卷曲/% Random coil	延伸链/% Extended strand
ZoDUF966_1b	Maker00000492	276	29.97	6.61	55.20	-0.774	19.20	5.07	66.30	9.42
ZoDUF966_2c	Maker00001450	256	28.67	9.53	57.87	-0.980	25.78	9.38	55.08	9.77
ZoDUF966_3b	Maker00008957	539	59.07	6.18	64.98	-0.571	19.85	4.27	64.38	11.50
ZoDUF966_4b	Maker00034379	369	40.91	8.19	56.91	-0.696	21.68	6.50	59.08	12.74
ZoDUF966_5a	Maker00034617	461	50.76	8.17	62.65	-0.730	16.27	4.34	65.73	13.67
ZoDUF966_6c	Maker00037034	429	46.93	7.95	60.91	-0.719	26.57	4.43	58.28	10.72
ZoDUF966_7a	Maker00037143	455	50.99	8.54	60.85	-0.736	17.58	4.84	64.84	12.75
ZoDUF966_8a	Maker00039356	500	56.21	9.03	69.83	-0.775	18.45	4.96	61.71	14.88
ZoDUF966_9b	Maker00055807	413	45.97	8.83	48.50	-0.762	23.97	5.57	60.05	10.41
ZoDUF966_10a	Maker00065349	581	64.27	8.24	64.70	-0.733	17.90	3.79	66.27	12.05
ZoDUF966_11a	Maker00071931	442	48.89	6.39	72.23	-0.798	17.42	3.85	66.97	11.76

命名 Name	基因ID Gene ID	长度/aa Length	分子量/kD Molecular weight	pI	不稳定指数 Instability index	亲水性Grand average of hydropathicity	α螺旋/% Alpha- helix	β折叠/% Beta- pleated sheet	无规则卷曲/% Random coil	延伸链/% Extended strand
ZoDUF966_1b	Maker00000492	276	29.97	6.61	55.20	-0.774	19.20	5.07	66.30	9.42
ZoDUF966_2c	Maker00001450	256	28.67	9.53	57.87	-0.980	25.78	9.38	55.08	9.77
ZoDUF966_3b	Maker00008957	539	59.07	6.18	64.98	-0.571	19.85	4.27	64.38	11.50
ZoDUF966_4b	Maker00034379	369	40.91	8.19	56.91	-0.696	21.68	6.50	59.08	12.74
ZoDUF966_5a	Maker00034617	461	50.76	8.17	62.65	-0.730	16.27	4.34	65.73	13.67
ZoDUF966_6c	Maker00037034	429	46.93	7.95	60.91	-0.719	26.57	4.43	58.28	10.72
ZoDUF966_7a	Maker00037143	455	50.99	8.54	60.85	-0.736	17.58	4.84	64.84	12.75
ZoDUF966_8a	Maker00039356	500	56.21	9.03	69.83	-0.775	18.45	4.96	61.71	14.88
ZoDUF966_9b	Maker00055807	413	45.97	8.83	48.50	-0.762	23.97	5.57	60.05	10.41
ZoDUF966_10a	Maker00065349	581	64.27	8.24	64.70	-0.733	17.90	3.79	66.27	12.05
ZoDUF966_11a	Maker00071931	442	48.89	6.39	72.23	-0.798	17.42	3.85	66.97	11.76

重复基因对 Duplicated gene pairs	异义替换 K_a	同义替换 K_s	K_a/K_s	选择类型 Types of selection
ZoDUF966_5a/ZoDUF966_10a	0.114	0.310	0.369	纯化选择 Purifying selection
ZoDUF966_8a/ZoDUF966_7a	0.122	0.407	0.301	纯化选择 Purifying selection
ZoDUF966_9b/ZoDUF966_1b	0.094	0.333	0.283	纯化选择 Purifying selection
ZoDUF966_10a/ZoDUF966_7a	0.310	0.982	0.316	纯化选择 Purifying selection

Identification and Expression Pattern Analysis of DUF966 Gene Family Members in Ginger

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