Acta Horticulturae Sinica ›› 2024, Vol. 51 ›› Issue (5): 1005-1016.doi: 10.16420/j.issn.0513-353x.2023-0232
• Genetic & Breeding·Germplasm Resources·Molecular Biology • Previous Articles Next Articles
WANG Wenjiao**(), XING Junjie, SHEN Chengcheng, LI Bin
Received:
2023-06-06
Revised:
2024-03-11
Online:
2024-05-25
Published:
2024-05-29
WANG Wenjiao, XING Junjie, SHEN Chengcheng, LI Bin. Screening and Functional Analysis of CsCOL5,the Upstream Regulator of CsCER1,in Cucumber Pericarp Wax Synthesis[J]. Acta Horticulturae Sinica, 2024, 51(5): 1005-1016.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2023-0232
Fig. 1 Schematic diagram of CsCOL5 gene and target in cucumber A:The black boxes and lines represent exons and non-coding regions,respectively. The red vertical bars indicate the target location and the gRNAs name of the design. B,C:Carrier diagram. The red dotted line in B was cut off with endonucliase and transferred to the polylinker of C.
Fig. 2 Location of promoter cis-acting element distribution(A)and decoy selection(B)of the CsCER1 gene The promoter elements include anaerobic induction(ARE),light responsive element(AE-box,Box-4,TCT-Motif,G-box,L-box,LAMP-element),protein binding sites(Box-III),MYB binding sites involved in drought-inducibility(MBS),gibberellin response(P-box,TATC-box),defense and stress responsiveness(TC-rich),salicylic acid response(TCA-element),circadian control(Circadian).
Fig. 3 The result of interaction between COL5 and CsCER1,PERK1 and CsCER1 10-1,10-2,10-3 and 10-4 were the dilution gradients of yeast Y1HGold(pAbAi-CsCER1)solution.
基因库ID Gene bank ID | 基因名 Gene name | 基因组ID Genome ID | 功能描述 Description | 亚细胞定位 Subcellular localization | 转录因子 TF |
---|---|---|---|---|---|
KAA0042485.1 | HSPA2 | CsaV3_5G026450.1 | 热休克同源的70 kD蛋白2-like Heat shock cognate 70 kD protein 2-like | 细胞质、细胞核 Cytoplasm,nucleus | 是 Yes |
KAA0053034.1 | ZFP | CsaV3_3G001590.1 | 推定的锌结合蛋白 Putative zinc-binding protein | 细胞核 Nucleus | 是 Yes |
KAE8637537.1 | hypothetical protein | CsaV3_UNG165240.1 | 假定的蛋白质CSA_017393 Hypothetical protein CSA_017393 | 细胞核、线粒体 Nucleus,mitochondria | 是 Yes |
XM_004139789.3 | PGK | CsaV3_7G022930.1 | 黄瓜磷酸甘油酸激酶 Cucumis sativus phosphoglycerate kinase | 细胞核、细胞质、线粒体 Nucleus,cytoplasm,mitochondria | 是 Yes |
XM_011659861.2 | UBQ14 | CsaV3_6G049240.1 | 黄瓜的聚泛素 Cucumis sativus polyubiquitin | 细胞质、细胞核、液泡 Cytoplasm,nucleus,vacuole | 是 Yes |
XP_004134215.1 | TCTP | CsaV3_3G014730.1 | 翻译控制肿瘤蛋白 Translationally-controlled tumor protein homolog | 细胞质、细胞核、线粒体 Nucleus,cytoplasm,mitochondria | 是 Yes |
XP_004135973.1 | PP2C49 | CsaV3_7G030300.1 | 蛋白磷酸酶2C 49 Probable protein phosphatase 2C 49 | 细胞质、细胞核、线粒体 Nucleus,cytoplasm,mitochondria | 是 Yes |
XP_004136304.2 | AIG2 | CsGy3G042330.1 | 类似AIG2的蛋白质D的异构体 X1 AIG2-like protein D isoform X1 | 细胞质、细胞核、线粒体 Nucleus,cytoplasm,mitochondria | 是 Yes |
XP_004144847.1 | HIPP26.1 | CsaV3_7G001010.1 | 与重金属相关的异戊烯酸化植物蛋白26 Heavy metal-associated isoprenylated plant protein 26 | 细胞质、细胞核 Cytoplasm,nucleus | 是 Yes |
XP_004146297.1 | COL5 | CsGy1G019700.1 | 锌指蛋白CONSTANS-LIKE 5-like Zinc finger protein CONSTANS-LIKE 5-like | 细胞质、细胞核、线粒体 Nucleus,cytoplasm,mitochondria | 是 Yes |
XP_004146881.1 | DHNA2 | CsaV3_4G004540.1 | 二氢蝶呤醛缩酶2 Dihydroneopterin aldolase 2 | 细胞质、细胞核 Cytoplasm,nucleus | 是 Yes |
XP_004150052.1 | PERK1 | CsaV3_1G024290.1 | 富含脯氨酸的受体样蛋白激酶PERK1 Proline-rich receptor-like protein kinase PERK1 | 细胞核 Nucleus | 是 Yes |
XP_004152924.1 | DEAD32 | CsaV3_3G005200.1 | 依赖型DEAD-box RNA解旋酶 DEAD-box ATP-dependent RNA helicase 32 | 细胞质、细胞核 Cytoplasm,nucleolus | 是 Yes |
XP_008439666.1 | DNA-binding protein | Csa6G522140.1 | DNA结合蛋白 DDB_G0278111 DNA-binding protein DDB_G0278111 | 细胞核、胞质溶胶 Nucleus,cytosol | 是 Yes |
XP_011658294.1 | GLO1 | CsaV3_6G051820.1 | GLO1乙醇酸氧化酶 (S)-2-hydroxy-acid oxidase GLO1 | 细胞质、细胞核、线粒体 Cytoplasm,nucleus,mitochondria | 是 Yes |
Table 1 Y1H screening results positive clonal localization analysis
基因库ID Gene bank ID | 基因名 Gene name | 基因组ID Genome ID | 功能描述 Description | 亚细胞定位 Subcellular localization | 转录因子 TF |
---|---|---|---|---|---|
KAA0042485.1 | HSPA2 | CsaV3_5G026450.1 | 热休克同源的70 kD蛋白2-like Heat shock cognate 70 kD protein 2-like | 细胞质、细胞核 Cytoplasm,nucleus | 是 Yes |
KAA0053034.1 | ZFP | CsaV3_3G001590.1 | 推定的锌结合蛋白 Putative zinc-binding protein | 细胞核 Nucleus | 是 Yes |
KAE8637537.1 | hypothetical protein | CsaV3_UNG165240.1 | 假定的蛋白质CSA_017393 Hypothetical protein CSA_017393 | 细胞核、线粒体 Nucleus,mitochondria | 是 Yes |
XM_004139789.3 | PGK | CsaV3_7G022930.1 | 黄瓜磷酸甘油酸激酶 Cucumis sativus phosphoglycerate kinase | 细胞核、细胞质、线粒体 Nucleus,cytoplasm,mitochondria | 是 Yes |
XM_011659861.2 | UBQ14 | CsaV3_6G049240.1 | 黄瓜的聚泛素 Cucumis sativus polyubiquitin | 细胞质、细胞核、液泡 Cytoplasm,nucleus,vacuole | 是 Yes |
XP_004134215.1 | TCTP | CsaV3_3G014730.1 | 翻译控制肿瘤蛋白 Translationally-controlled tumor protein homolog | 细胞质、细胞核、线粒体 Nucleus,cytoplasm,mitochondria | 是 Yes |
XP_004135973.1 | PP2C49 | CsaV3_7G030300.1 | 蛋白磷酸酶2C 49 Probable protein phosphatase 2C 49 | 细胞质、细胞核、线粒体 Nucleus,cytoplasm,mitochondria | 是 Yes |
XP_004136304.2 | AIG2 | CsGy3G042330.1 | 类似AIG2的蛋白质D的异构体 X1 AIG2-like protein D isoform X1 | 细胞质、细胞核、线粒体 Nucleus,cytoplasm,mitochondria | 是 Yes |
XP_004144847.1 | HIPP26.1 | CsaV3_7G001010.1 | 与重金属相关的异戊烯酸化植物蛋白26 Heavy metal-associated isoprenylated plant protein 26 | 细胞质、细胞核 Cytoplasm,nucleus | 是 Yes |
XP_004146297.1 | COL5 | CsGy1G019700.1 | 锌指蛋白CONSTANS-LIKE 5-like Zinc finger protein CONSTANS-LIKE 5-like | 细胞质、细胞核、线粒体 Nucleus,cytoplasm,mitochondria | 是 Yes |
XP_004146881.1 | DHNA2 | CsaV3_4G004540.1 | 二氢蝶呤醛缩酶2 Dihydroneopterin aldolase 2 | 细胞质、细胞核 Cytoplasm,nucleus | 是 Yes |
XP_004150052.1 | PERK1 | CsaV3_1G024290.1 | 富含脯氨酸的受体样蛋白激酶PERK1 Proline-rich receptor-like protein kinase PERK1 | 细胞核 Nucleus | 是 Yes |
XP_004152924.1 | DEAD32 | CsaV3_3G005200.1 | 依赖型DEAD-box RNA解旋酶 DEAD-box ATP-dependent RNA helicase 32 | 细胞质、细胞核 Cytoplasm,nucleolus | 是 Yes |
XP_008439666.1 | DNA-binding protein | Csa6G522140.1 | DNA结合蛋白 DDB_G0278111 DNA-binding protein DDB_G0278111 | 细胞核、胞质溶胶 Nucleus,cytosol | 是 Yes |
XP_011658294.1 | GLO1 | CsaV3_6G051820.1 | GLO1乙醇酸氧化酶 (S)-2-hydroxy-acid oxidase GLO1 | 细胞质、细胞核、线粒体 Cytoplasm,nucleus,mitochondria | 是 Yes |
Fig. 4 Differential expression(A)of candidate genes in different waxy cucumber materialsand promoter elements(B) The red dots in Figure A represent genes with different expression levels of‘ HCW and LCW. The promoter elements in Figure B is the light responsive(AAAC,ACE,AE-box,Box-4,G-Box,GATA-motif,GT1-motif,I-box,GATT-motif,GA-motif,Gap-box,MRE),the abscisic acid responsiveness(ABRE),the anaerobic induction(ARE),part of an auxin-responsive element(AuxRE,AuxRR),MYB binding sites involved in drought-inducibility(MBS),the MeJA-responsiveness(CGTCA-motif),low-temperature responsiveness(LTR)zein metabolism regulation(O2-site),differentiation of the palisade mesophyll cells(HD-Zip),cis-acting regulatory element related to meristem expression(CAT-box),gibberellin-responsive element(GARE-motif).
Fig. 5 Fluorescence quantification of CsCOL5 in different tissue sites Different lowercase letters indicate significant differences at 0.05 level. The same below.
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