Acta Horticulturae Sinica ›› 2023, Vol. 50 ›› Issue (1): 161-169.doi: 10.16420/j.issn.0513-353x.2021-0756
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LUO Hailin1, YUAN Lei1, WENG Hua1, YAN Jiahui1,*(), GUO Qingyun1,*(), WANG Wenqing2, MA Xinming3
Received:
2022-05-12
Revised:
2022-08-13
Online:
2023-01-25
Published:
2023-01-18
Contact:
*(E-mail:CLC Number:
LUO Hailin, YUAN Lei, WENG Hua, YAN Jiahui, GUO Qingyun, WANG Wenqing, MA Xinming. Identification and Analysis of Complete Genomic Sequence of Broad Bean Wilt Virus 2 Pepper Isolate in Qinghai Province[J]. Acta Horticulturae Sinica, 2023, 50(1): 161-169.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2021-0756
病毒序列 Virus sequence | 引物名称 Name | 引物序列(5′-3′) Sequence | 退火温度/℃ Tm | 片段大小/bp Length | 文献 Reference |
---|---|---|---|---|---|
BBWV2 | BBWVdF | AGRTATATGCTTGGGCAAGCGCATG | 60 | 490 | 刘勇 等, |
BBWVdR | CATGAACATTCCCCATCTCCACGTG | ||||
RNA1 | BBWV2 1-F | AAACAAACAGCTTTCGTTCCG | 54 | 1 080 | Kwak et 2013b |
BBWV2 1-R | CTGAAATAGCTGCCATAGCAG | ||||
BBWV2 1-F2 | TTTGCAGCGTGGATGCC | 55 | 1 075 | ||
BBWV2 1-R2 | CTTGTAGCCTGACCAAAAAGG | ||||
BBWV2 1-F3 | SGCAGATTGGTTATSWGAR | 53 | 880 | ||
BBWV2 1-R3 | ACCGTGAGRCCCACWAR | ||||
BBWV2 1-F4 | MGRCGAAGRCACGCAGTRRT | 57 | 1 083 | ||
BBWV2 1-R4 | AAGCACACTTGTGTYCTMACAT | ||||
BBWV2 1-F5 | CAAAGTGATRTKCCTAAYC | 48 | 1 561 | ||
BBWV2 1-R5 | CCRTCAAAYCTGCTGTAA | ||||
BBWV2 1-F6 | CGSCTWGATCGTGGTCC | 54 | 1 766 | ||
BBWV2 1-R6 | TTCCCTCACTACTGAAATTTACTC | ||||
RNA2 | BBWV2 2-1F | CAAACAGCTTTCGTTCCGAA | 52 | 927 | Kwak et 2013b |
BBWV2 2-1R | AAGCCATCTGCCACCAATTC | ||||
BBWY2 2-1d | CGCATA(G)GTC(T)TCTT(C)GTA(G)GCA(T)GA | 55 | 900 | ||
BBWV2 2-2F | GCCATGTCAGGTGCTGGA | ||||
BBWV2 2-2U | TACAAT(C)TTG(A)CCTGGG(A)CCTAGC | 56 | 1 119 | ||
BBMV2 2-2r | CATGTTCCCAACCTTTTCAATGT | ||||
BBWV2 2-3U | ATTT(C)TA(G)GATTTTACT(C)CTC(T)ATGAG | 55 | 1 163 | ||
BBWV2 2-3d | AGGTCATGGAACCCATTTTAATGG |
Table 1 BBWV2 detection and sequencing primer sequence
病毒序列 Virus sequence | 引物名称 Name | 引物序列(5′-3′) Sequence | 退火温度/℃ Tm | 片段大小/bp Length | 文献 Reference |
---|---|---|---|---|---|
BBWV2 | BBWVdF | AGRTATATGCTTGGGCAAGCGCATG | 60 | 490 | 刘勇 等, |
BBWVdR | CATGAACATTCCCCATCTCCACGTG | ||||
RNA1 | BBWV2 1-F | AAACAAACAGCTTTCGTTCCG | 54 | 1 080 | Kwak et 2013b |
BBWV2 1-R | CTGAAATAGCTGCCATAGCAG | ||||
BBWV2 1-F2 | TTTGCAGCGTGGATGCC | 55 | 1 075 | ||
BBWV2 1-R2 | CTTGTAGCCTGACCAAAAAGG | ||||
BBWV2 1-F3 | SGCAGATTGGTTATSWGAR | 53 | 880 | ||
BBWV2 1-R3 | ACCGTGAGRCCCACWAR | ||||
BBWV2 1-F4 | MGRCGAAGRCACGCAGTRRT | 57 | 1 083 | ||
BBWV2 1-R4 | AAGCACACTTGTGTYCTMACAT | ||||
BBWV2 1-F5 | CAAAGTGATRTKCCTAAYC | 48 | 1 561 | ||
BBWV2 1-R5 | CCRTCAAAYCTGCTGTAA | ||||
BBWV2 1-F6 | CGSCTWGATCGTGGTCC | 54 | 1 766 | ||
BBWV2 1-R6 | TTCCCTCACTACTGAAATTTACTC | ||||
RNA2 | BBWV2 2-1F | CAAACAGCTTTCGTTCCGAA | 52 | 927 | Kwak et 2013b |
BBWV2 2-1R | AAGCCATCTGCCACCAATTC | ||||
BBWY2 2-1d | CGCATA(G)GTC(T)TCTT(C)GTA(G)GCA(T)GA | 55 | 900 | ||
BBWV2 2-2F | GCCATGTCAGGTGCTGGA | ||||
BBWV2 2-2U | TACAAT(C)TTG(A)CCTGGG(A)CCTAGC | 56 | 1 119 | ||
BBMV2 2-2r | CATGTTCCCAACCTTTTCAATGT | ||||
BBWV2 2-3U | ATTT(C)TA(G)GATTTTACT(C)CTC(T)ATGAG | 55 | 1 163 | ||
BBWV2 2-3d | AGGTCATGGAACCCATTTTAATGG |
国家 Country | 寄主 Host | 分离物 Isolate | RNA1 | RNA2 | ||||
---|---|---|---|---|---|---|---|---|
核苷酸/% Nucleotide | 氨基酸/% Amion acid | 核苷酸/% Nucleotide | 氨基酸/% Amion acid | |||||
韩国Korea | 蚕豆 Vicia faba | BBWV2-BB9 | 100 | 89.92 | 100 | 84.34 | ||
菠菜 Spinacia oleracea | BBWV2-SP2 | 100 | 90.02 | 100 | 84.13 | |||
BBWV2-SP1 | 100 | 90.00 | 100 | 84.19 | ||||
BBWV2-SP | 100 | 89.97 | 100 | 84.72 | ||||
牛膝 Achyranthes bidentata Blume | BBWV2-AB1 | 100 | 90.24 | 100 | 86.97 | |||
辣椒 Capsicum annuum | BBWV2-RP2 | 100 | 90.24 | 100 | 84.04 | |||
辣椒 | BBWV2-PAP1 | 100 | 89.95 | 100 | 84.80 | |||
C. annuum var. gulosum | BBWV2-PAP3 | 100 | 91.48 | 100 | 84.91 | |||
薯蓣 Dioscorea oppositifolia | BBWV2-BR1 | 99 | 77.44 | 99 | 87.16 | |||
中国China | 蚕豆 Vicia faba | BBWV2-B935 | 99 | 77.58 | 100 | 84.51 | ||
薯蓣 Dioscorea opposita | BBWV2-SG1 | 99 | 77.32 | 100 | 87.09 | |||
辣椒 Capsicum annuum L. | BBWV2-Ca | 99 | 77.36 | 99 | 82.41 | |||
番茄 Lycopersicon esculentum | BBWV2-XJ14-3 | 99 | 77.50 | 100 | 87.18 | |||
日本Japan | 三花龙胆 Gentiana triflora | BBWV2-Ty | 99 | 77.08 | 99 | 88.61 | ||
蚕豆 Vicia faba | BBWV2-MB7 | 99 | 78.03 | 100 | 85.90 | |||
西班牙Spain | 辣椒 Capsicum annuum | BBWV1-Ben | 74 | 65.68 | 62 | 64.99 | ||
蚕豆 Vicia faba | BBWV1-PBenR1 | 74 | 66.01 | 62 | 65.16 | |||
英国 United Kingdom | 块根落葵 Ullucus tuberosus | BBWV1-UL1 | 73 | 65.88 | 52 | 66.61 |
Table 2 The similarity between the RNA sequence of Qinghai pepper isolate and other related nucleotide sequences and amino acid sequences
国家 Country | 寄主 Host | 分离物 Isolate | RNA1 | RNA2 | ||||
---|---|---|---|---|---|---|---|---|
核苷酸/% Nucleotide | 氨基酸/% Amion acid | 核苷酸/% Nucleotide | 氨基酸/% Amion acid | |||||
韩国Korea | 蚕豆 Vicia faba | BBWV2-BB9 | 100 | 89.92 | 100 | 84.34 | ||
菠菜 Spinacia oleracea | BBWV2-SP2 | 100 | 90.02 | 100 | 84.13 | |||
BBWV2-SP1 | 100 | 90.00 | 100 | 84.19 | ||||
BBWV2-SP | 100 | 89.97 | 100 | 84.72 | ||||
牛膝 Achyranthes bidentata Blume | BBWV2-AB1 | 100 | 90.24 | 100 | 86.97 | |||
辣椒 Capsicum annuum | BBWV2-RP2 | 100 | 90.24 | 100 | 84.04 | |||
辣椒 | BBWV2-PAP1 | 100 | 89.95 | 100 | 84.80 | |||
C. annuum var. gulosum | BBWV2-PAP3 | 100 | 91.48 | 100 | 84.91 | |||
薯蓣 Dioscorea oppositifolia | BBWV2-BR1 | 99 | 77.44 | 99 | 87.16 | |||
中国China | 蚕豆 Vicia faba | BBWV2-B935 | 99 | 77.58 | 100 | 84.51 | ||
薯蓣 Dioscorea opposita | BBWV2-SG1 | 99 | 77.32 | 100 | 87.09 | |||
辣椒 Capsicum annuum L. | BBWV2-Ca | 99 | 77.36 | 99 | 82.41 | |||
番茄 Lycopersicon esculentum | BBWV2-XJ14-3 | 99 | 77.50 | 100 | 87.18 | |||
日本Japan | 三花龙胆 Gentiana triflora | BBWV2-Ty | 99 | 77.08 | 99 | 88.61 | ||
蚕豆 Vicia faba | BBWV2-MB7 | 99 | 78.03 | 100 | 85.90 | |||
西班牙Spain | 辣椒 Capsicum annuum | BBWV1-Ben | 74 | 65.68 | 62 | 64.99 | ||
蚕豆 Vicia faba | BBWV1-PBenR1 | 74 | 66.01 | 62 | 65.16 | |||
英国 United Kingdom | 块根落葵 Ullucus tuberosus | BBWV1-UL1 | 73 | 65.88 | 52 | 66.61 |
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