Acta Horticulturae Sinica ›› 2022, Vol. 49 ›› Issue (12): 2683-2702.doi: 10.16420/j.issn.0513-353x.2021-0674
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SONG Mengfei, ZHA Gaohui, CHEN Jinfeng, LOU Qunfeng()
Received:
2022-03-22
Revised:
2022-05-12
Online:
2022-12-25
Published:
2023-01-02
Contact:
LOU Qunfeng
E-mail:qflou@njau.edu.cn
Supported by:
CLC Number:
SONG Mengfei, ZHA Gaohui, CHEN Jinfeng, LOU Qunfeng. Research Progress on Molecular Basis of Plant Architecture Related Traits in Cucumber[J]. Acta Horticulturae Sinica, 2022, 49(12): 2683-2702.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2021-0674
性状分类 Classification | 性状/突变体 Phenotype /mutant | 基因名称 Gene name | 基因编号 Gene ID | 参考文献 Reference |
---|---|---|---|---|
株高 Plant height | 矮化Dawrf/cp | cp | CsaV3_4G036030 | Li et al., |
矮化Dawrf/Csdw | CsCLAVATA1 | CsaV3_3G045960 | Xu et al., | |
矮化Dawrf/td-1 | CsGN5 | CsaV3_6G052930 | Chen et al., | |
矮化Dawrf | CsYAB5 | CsaV3_2G002960 | Yan et al., | |
短节间Short internote/si | CsVFB1 | CsaV3_4G034690 | Lin et al., | |
紧凑株型Compact/cp-3 | Cullin | CsaV3_6G017300 | van der Linden, | |
紧凑株型Compact/cpa | CsDWF5 | CsaV3_7G033720 | Zhang et al., | |
超级紧凑株型Super compact/scp-1 | CsCYP85A | CsaV3_5G038650 | Wang et al., | |
超级紧凑株型Super compact/scp-2 | CsDET2 | CsaV3_3G034190 | Hou et al., | |
短节间距Short internote | CsIVP | CsaV3_6G041730 | Yan et al., | |
有限生长 Determinate growth | 有限生长Determinate growth/de | CsTFL1 | CsaV3_6G040640 | Wen et al., |
CsTLF1d /CsCEN | CsaV3_6G014990 | Njogu et al., | ||
CsLFY | CsaV3_1G000050 | Zhao et al., | ||
CsCML25 | CsaV3_5G028160 | 王雪艳 等, | ||
下胚轴长度 Hypocotyl length | 短下胚轴Short hypocotyl/sh1 | sh1 | CsaV3_3G012370 | Bo et al., |
短下胚轴Short hypocotyl/sh5.1 | sh5.1 | CsaV3_5G005500 | Zhang et al., | |
长下胚轴Long hypocotyl/lh | CsLH | CsaV3_3G015190 | Liu et al., | |
叶形 Leaf shape | 裂叶Lobed leaves | CsHAN1 | CsaV3_4G005580 | Ding et al., |
小心形叶 Small and cordate leaf/scl1 | scl1 | CsaV3_7G006420 | Gao et al., | |
窄叶Narrower leaf/mango fruit | CsWOX1 | CsaV3_1G007120 | Niu et al., | |
卷叶Curly leaf/cul-1,cul-2 | CsPHB | CsaV3_6G052310 | Rong et al., | |
圆叶Round leaf/rl | rl | CsaV3_1G036980 | Song et al., | |
叶大小 Leaf size | 小叶Little leaf/ll | ll | CsaV3_6G009540 | Yang et al., |
小心形叶 Small and cordate leaf/scl1 | scl1 | CsaV3_7G006420 | Gao et al., | |
真叶变形 Rosette leaf | CsBRC1-like | CsaV3_1G006490 | Shen et al., | |
侧枝发育 Lateral branch | 侧枝抑制 Lateral suppressor | CLS | CsaV3_3G003590 | Yuan et al., |
多分枝 Multiple branches | CsBRC1 | CsaV3_1G003610 | Shen et al., | |
卷须发育 Tendril | 卷须退化Modified tendrils/ten | TEN | CsaV3_5G039160 | Wang et al., |
卷须异常Tendril-less/td-1 | CsGN5 | CsaV3_6G052930 | Chen et al., |
Table 1 Plant architecture related genes in cucumber
性状分类 Classification | 性状/突变体 Phenotype /mutant | 基因名称 Gene name | 基因编号 Gene ID | 参考文献 Reference |
---|---|---|---|---|
株高 Plant height | 矮化Dawrf/cp | cp | CsaV3_4G036030 | Li et al., |
矮化Dawrf/Csdw | CsCLAVATA1 | CsaV3_3G045960 | Xu et al., | |
矮化Dawrf/td-1 | CsGN5 | CsaV3_6G052930 | Chen et al., | |
矮化Dawrf | CsYAB5 | CsaV3_2G002960 | Yan et al., | |
短节间Short internote/si | CsVFB1 | CsaV3_4G034690 | Lin et al., | |
紧凑株型Compact/cp-3 | Cullin | CsaV3_6G017300 | van der Linden, | |
紧凑株型Compact/cpa | CsDWF5 | CsaV3_7G033720 | Zhang et al., | |
超级紧凑株型Super compact/scp-1 | CsCYP85A | CsaV3_5G038650 | Wang et al., | |
超级紧凑株型Super compact/scp-2 | CsDET2 | CsaV3_3G034190 | Hou et al., | |
短节间距Short internote | CsIVP | CsaV3_6G041730 | Yan et al., | |
有限生长 Determinate growth | 有限生长Determinate growth/de | CsTFL1 | CsaV3_6G040640 | Wen et al., |
CsTLF1d /CsCEN | CsaV3_6G014990 | Njogu et al., | ||
CsLFY | CsaV3_1G000050 | Zhao et al., | ||
CsCML25 | CsaV3_5G028160 | 王雪艳 等, | ||
下胚轴长度 Hypocotyl length | 短下胚轴Short hypocotyl/sh1 | sh1 | CsaV3_3G012370 | Bo et al., |
短下胚轴Short hypocotyl/sh5.1 | sh5.1 | CsaV3_5G005500 | Zhang et al., | |
长下胚轴Long hypocotyl/lh | CsLH | CsaV3_3G015190 | Liu et al., | |
叶形 Leaf shape | 裂叶Lobed leaves | CsHAN1 | CsaV3_4G005580 | Ding et al., |
小心形叶 Small and cordate leaf/scl1 | scl1 | CsaV3_7G006420 | Gao et al., | |
窄叶Narrower leaf/mango fruit | CsWOX1 | CsaV3_1G007120 | Niu et al., | |
卷叶Curly leaf/cul-1,cul-2 | CsPHB | CsaV3_6G052310 | Rong et al., | |
圆叶Round leaf/rl | rl | CsaV3_1G036980 | Song et al., | |
叶大小 Leaf size | 小叶Little leaf/ll | ll | CsaV3_6G009540 | Yang et al., |
小心形叶 Small and cordate leaf/scl1 | scl1 | CsaV3_7G006420 | Gao et al., | |
真叶变形 Rosette leaf | CsBRC1-like | CsaV3_1G006490 | Shen et al., | |
侧枝发育 Lateral branch | 侧枝抑制 Lateral suppressor | CLS | CsaV3_3G003590 | Yuan et al., |
多分枝 Multiple branches | CsBRC1 | CsaV3_1G003610 | Shen et al., | |
卷须发育 Tendril | 卷须退化Modified tendrils/ten | TEN | CsaV3_5G039160 | Wang et al., |
卷须异常Tendril-less/td-1 | CsGN5 | CsaV3_6G052930 | Chen et al., |
性状 Trait | 参考文献 Reference | QTL | 贡献率/% Contribution | 连锁群号 Linkage group No. | 染色体号 Chromosome No. |
---|---|---|---|---|---|
主茎长度 Main stem length | Serquen et al., | F-de | 44.5 | B | |
OP-R13-OP-H5 | 6.5 | C | |||
ll-BC-592 | 12.1 | D | |||
U15-2-OP-I20 | 8.0 | E | |||
OP-AB14-BC-469 | 9.5 | G | |||
株高 Plant height | 辛明 等, | Qchl1 | 23.0 | 1 | |
Qchl2 | 8.4 | 1 | |||
嵇怡 等, | QPH4_1 | 13.2 | 4 | ||
QPH4_2 | 13.0 | 4 | |||
苗晗 等, | Msl1.1 | 17.2 ~ 32.1 | 1 | ||
Msl6.1 | 8.6 | 6 | |||
Msl6.2 | 9.6 | 6 | |||
节间距 Length of the main stem internode | 苗晗 等, | Lmi1.1 | 11.5 ~ 25.0 | 1 | |
Lmi2.1 | 8.5 | 2 | |||
Lmi5.1 | 10.0 | 5 | |||
Lmi5.2 | 8.1 | 5 | |||
Lmi6.1 | 11.5 | 6 | |||
Lmi6.2 | 7.5 | 6 | |||
嵇怡 等, | QPN4_1 | 13.1 | 4 | ||
节数 Node number of main stem | 苗晗 等, | Nms1.1 | 32.7 | 1 | |
下胚轴长 Hypocotyl length | 张冠英 等, | Hyl1.1 | 12.2 | 1 | |
Hyl2.1 | 9.4 | 2 | |||
Hyl2.2 | 7.4 | 2 | |||
Hyl2.3 | 5.5 | 2 | |||
Hyl2.4 | 5.9 | 2 | |||
Hyl4.1 | 8.9 | 4 | |||
Hyl4.2 | 6.9 | 4 | |||
Hyl6.1 | 19.8 | 6 | |||
Hyl6.2 | 10.4 | 6 | |||
Hyl7.1 | 6.4 | 7 | |||
苗晗 等, | Hl5.1 | 15.2 | 5 | ||
Hl5.2 | 13.4 | 5 | |||
Hl5.3 | 11.4 ~ 21.0 | 5 | |||
Hl6.1 | 22.6 ~ 24.2 | 6 | |||
Hl6.2 | 17.6 ~ 22.5 | 6 | |||
Wang et al., | Hl1.1 | 10.3 | 4 | ||
Hl2.1 | 7.6 ~ 11.3 | 2 | |||
Hl2.2 | 8.7 | 2 | |||
Hl3.1 | 10.0 | 3 | |||
Hl3.2 | 13.7 | 3 | |||
Hl3.3 | 15.1 | 3 | |||
Hl3.4 | 12.7 | 3 | |||
Hl5.1 | 14.8 | 5 | |||
性状 Trait | 参考文献 Reference | QTL | 贡献率/% Contribution | 连锁群号 Linkage group No. | 染色体号 Chromosome No. |
Hl5.2 | 10.8 | 5 | |||
Hl6.1 | 11.4 | 6 | |||
蔡和序 等, | Hl1.1 | \ | 1 | ||
Hl1.2 | \ | 1 | |||
Hl2.1 | \ | 2 | |||
Hl3.1 | \ | 3 | |||
Hl3.2 | \ | 3 | |||
Hl4.1 | \ | 4 | |||
Hl5.1 | \ | 5 | |||
Hl6.1 | \ | 6 | |||
叶面积 Leaf area | Fazio et al., | ll | \ | 1 | |
吴鹏 等, | Qchl1 | 8.7 | 1 | ||
Weng et al., | ll | \ | 6 | ||
史婷婷 等, | ll2 | 21.2 | 7 | ||
张海英 等, | la-1 | 10.6 | 1 | ||
la-2 | 11.9 | 1 | |||
la-3 | 7.3 | 1 | |||
la-4 | 8.3 | 7 | |||
la-5 | 20.2 | 9 | |||
叶大小 Leaf size | Qi et al., | ls1.1 | \ | 1 | |
ls2.1 | \ | 2 | |||
ls2.2 | \ | 2 | |||
李效尊, | lhl1.1 | 8.2 | 1 | ||
lhl1.2 | 9.6 | 1 | |||
lhl1.3 | 19.5 | 1 | |||
lhl1.4 | 5.1 ~ 7.0 | 1 | |||
lhl2.1 | 14.1 | 2 | |||
lhl2.2 | 8.1 | 2 | |||
lhl2.3 | 32.9 | 2 | |||
lhl6.1 | 4.7 ~ 9.5 | 6 | |||
侧枝长度 Lateral branch length | Wang et al., | lbl1 | 10.4 | 2 | |
lbl1 | 6.2 | 2 | |||
lbl1 | 7.7 | 1 | |||
lbl1 | 6.9 | 7 | |||
侧枝数 Lateral branch number | Serquen et al., | F | 13.1 | B | |
de-OP-L18-2 | 39.6 | B | |||
BC-403-OP-W7-2 | 13.6 | D | |||
OP-AJ6-BC-523 | 11.0 | D | |||
Fazio et al., | mlb1.1 | 9.1 ~ 10.6 | 1 | ||
mlb1.2 | 2.3 | 1 | |||
mlb1.3 | 1.8 | 1 | |||
mlb1.4 | 8.1 ~ 32.4 | 1 | |||
mlb3.1 | 3.5 | 3 | |||
mlb4.1 | 5.4 | 4 | |||
mlb4.2 | 4.2 | 4 | |||
mlb4.3 | 2.8 | 4 | |||
mlb4.4 | 1.7 ~ 4.6 | 4 | |||
mlb5.1 | 7.2 | 5 | |||
mlb6.1 | 1.5 ~ 2.9 | 6 | |||
mlb6.2 | 3.7 ~ 4.3 | 6 | |||
mlb7.1 | 2.8 | 7 | |||
Wang et al., | lbn1 | 10.6 | 2 | ||
lbn2 | 7.6 | 2 | |||
lbn3 | 6.5 | 1 | |||
lbn4 | 10.0 | 7 |
Table 2 QTLs related to plant type regulation in cucumber
性状 Trait | 参考文献 Reference | QTL | 贡献率/% Contribution | 连锁群号 Linkage group No. | 染色体号 Chromosome No. |
---|---|---|---|---|---|
主茎长度 Main stem length | Serquen et al., | F-de | 44.5 | B | |
OP-R13-OP-H5 | 6.5 | C | |||
ll-BC-592 | 12.1 | D | |||
U15-2-OP-I20 | 8.0 | E | |||
OP-AB14-BC-469 | 9.5 | G | |||
株高 Plant height | 辛明 等, | Qchl1 | 23.0 | 1 | |
Qchl2 | 8.4 | 1 | |||
嵇怡 等, | QPH4_1 | 13.2 | 4 | ||
QPH4_2 | 13.0 | 4 | |||
苗晗 等, | Msl1.1 | 17.2 ~ 32.1 | 1 | ||
Msl6.1 | 8.6 | 6 | |||
Msl6.2 | 9.6 | 6 | |||
节间距 Length of the main stem internode | 苗晗 等, | Lmi1.1 | 11.5 ~ 25.0 | 1 | |
Lmi2.1 | 8.5 | 2 | |||
Lmi5.1 | 10.0 | 5 | |||
Lmi5.2 | 8.1 | 5 | |||
Lmi6.1 | 11.5 | 6 | |||
Lmi6.2 | 7.5 | 6 | |||
嵇怡 等, | QPN4_1 | 13.1 | 4 | ||
节数 Node number of main stem | 苗晗 等, | Nms1.1 | 32.7 | 1 | |
下胚轴长 Hypocotyl length | 张冠英 等, | Hyl1.1 | 12.2 | 1 | |
Hyl2.1 | 9.4 | 2 | |||
Hyl2.2 | 7.4 | 2 | |||
Hyl2.3 | 5.5 | 2 | |||
Hyl2.4 | 5.9 | 2 | |||
Hyl4.1 | 8.9 | 4 | |||
Hyl4.2 | 6.9 | 4 | |||
Hyl6.1 | 19.8 | 6 | |||
Hyl6.2 | 10.4 | 6 | |||
Hyl7.1 | 6.4 | 7 | |||
苗晗 等, | Hl5.1 | 15.2 | 5 | ||
Hl5.2 | 13.4 | 5 | |||
Hl5.3 | 11.4 ~ 21.0 | 5 | |||
Hl6.1 | 22.6 ~ 24.2 | 6 | |||
Hl6.2 | 17.6 ~ 22.5 | 6 | |||
Wang et al., | Hl1.1 | 10.3 | 4 | ||
Hl2.1 | 7.6 ~ 11.3 | 2 | |||
Hl2.2 | 8.7 | 2 | |||
Hl3.1 | 10.0 | 3 | |||
Hl3.2 | 13.7 | 3 | |||
Hl3.3 | 15.1 | 3 | |||
Hl3.4 | 12.7 | 3 | |||
Hl5.1 | 14.8 | 5 | |||
性状 Trait | 参考文献 Reference | QTL | 贡献率/% Contribution | 连锁群号 Linkage group No. | 染色体号 Chromosome No. |
Hl5.2 | 10.8 | 5 | |||
Hl6.1 | 11.4 | 6 | |||
蔡和序 等, | Hl1.1 | \ | 1 | ||
Hl1.2 | \ | 1 | |||
Hl2.1 | \ | 2 | |||
Hl3.1 | \ | 3 | |||
Hl3.2 | \ | 3 | |||
Hl4.1 | \ | 4 | |||
Hl5.1 | \ | 5 | |||
Hl6.1 | \ | 6 | |||
叶面积 Leaf area | Fazio et al., | ll | \ | 1 | |
吴鹏 等, | Qchl1 | 8.7 | 1 | ||
Weng et al., | ll | \ | 6 | ||
史婷婷 等, | ll2 | 21.2 | 7 | ||
张海英 等, | la-1 | 10.6 | 1 | ||
la-2 | 11.9 | 1 | |||
la-3 | 7.3 | 1 | |||
la-4 | 8.3 | 7 | |||
la-5 | 20.2 | 9 | |||
叶大小 Leaf size | Qi et al., | ls1.1 | \ | 1 | |
ls2.1 | \ | 2 | |||
ls2.2 | \ | 2 | |||
李效尊, | lhl1.1 | 8.2 | 1 | ||
lhl1.2 | 9.6 | 1 | |||
lhl1.3 | 19.5 | 1 | |||
lhl1.4 | 5.1 ~ 7.0 | 1 | |||
lhl2.1 | 14.1 | 2 | |||
lhl2.2 | 8.1 | 2 | |||
lhl2.3 | 32.9 | 2 | |||
lhl6.1 | 4.7 ~ 9.5 | 6 | |||
侧枝长度 Lateral branch length | Wang et al., | lbl1 | 10.4 | 2 | |
lbl1 | 6.2 | 2 | |||
lbl1 | 7.7 | 1 | |||
lbl1 | 6.9 | 7 | |||
侧枝数 Lateral branch number | Serquen et al., | F | 13.1 | B | |
de-OP-L18-2 | 39.6 | B | |||
BC-403-OP-W7-2 | 13.6 | D | |||
OP-AJ6-BC-523 | 11.0 | D | |||
Fazio et al., | mlb1.1 | 9.1 ~ 10.6 | 1 | ||
mlb1.2 | 2.3 | 1 | |||
mlb1.3 | 1.8 | 1 | |||
mlb1.4 | 8.1 ~ 32.4 | 1 | |||
mlb3.1 | 3.5 | 3 | |||
mlb4.1 | 5.4 | 4 | |||
mlb4.2 | 4.2 | 4 | |||
mlb4.3 | 2.8 | 4 | |||
mlb4.4 | 1.7 ~ 4.6 | 4 | |||
mlb5.1 | 7.2 | 5 | |||
mlb6.1 | 1.5 ~ 2.9 | 6 | |||
mlb6.2 | 3.7 ~ 4.3 | 6 | |||
mlb7.1 | 2.8 | 7 | |||
Wang et al., | lbn1 | 10.6 | 2 | ||
lbn2 | 7.6 | 2 | |||
lbn3 | 6.5 | 1 | |||
lbn4 | 10.0 | 7 |
Fig. 1 Several compact / dwarf mutants of cucumber cp(Li et al.,2011);si(Lin et al.,2016);scp-1(Wang et al.,2017);scp-2(Hou et al.,2017);Csdw(Xu et al.,2018);cpa(Zhang et al.,2021b).
Fig. 2 Determine growth cucumber varieties A:CsTFL1 mutant WI1983Hde(Wen et al.,2019);B:RNAi gene silencing plants of CsTFL1d gene(Wen et al.,2021);C:CsCEN mutant D226(Njogu et al.,2020);D:RNAi silencing plants of CsLFY gene(Zhao et al.,2018).
Fig. 3 Cucumber hypocotyl length mutants A:Xishuangbanna cucumber with short hypocotyl growth habit(Bo et al.,2016);B:Light-sensitive long hypocotyl mutant lh(Liu et al.,2021); C:Temperature sensitive short hypocotyl mutant sh5.1(Zhang et al.,2021a).
Fig. 6 nlb and CsBRC1 genes regulate cucumber lateral branch development A:nlb gene mutation resulted in no lateral branch development in cucumber(Ren et al.,2013);B:The RNAi transgenic plant of CsBRC1 gene produced multi branches(Shen et al.,2019).
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