Acta Horticulturae Sinica ›› 2022, Vol. 49 ›› Issue (5): 1121-1135.doi: 10.16420/j.issn.0513-353x.2021-0092
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PAN Xinfeng, YE Fangting, MAO Zhijun, LI Zhaowei, FAN Kai()
Received:
2021-12-06
Revised:
2022-02-11
Online:
2022-05-25
Published:
2022-05-25
Contact:
FAN Kai
E-mail:fankai@fafu.edu.cn
CLC Number:
PAN Xinfeng, YE Fangting, MAO Zhijun, LI Zhaowei, FAN Kai. Genomic Identification and Molecular Evolution of the WRKY Family in Nymphaea colorata[J]. Acta Horticulturae Sinica, 2022, 49(5): 1121-1135.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2021-0092
名称 Name | 位点 Locus | 亚家族 Subfamily | 蛋白质 长度/aa Protein length | 分子量 Molecular Weight | pI | α-螺旋 α-helix | 延伸链 Extended strand | β-折叠 β-turn | 无规则卷曲 Random coil |
---|---|---|---|---|---|---|---|---|---|
NcWRKY01 | GWHPAAYW001268 | Ⅱd | 299 | 33 359.08 | 9.69 | 67 | 29 | 12 | 191 |
NcWRKY02 | GWHPAAYW001468 | Ⅲ | 219 | 24 178.36 | 9.1 | 89 | 28 | 4 | 98 |
NcWRKY03 | GWHPAAYW002553 | Ⅱc | 262 | 28 583.02 | 8.78 | 61 | 45 | 25 | 131 |
NcWRKY04 | GWHPAAYW003267 | Ⅲ | 350 | 39 563.96 | 5.07 | 78 | 37 | 14 | 221 |
NcWRKY05 | GWHPAAYW011370 | Ⅱc | 306 | 33 839.58 | 6.31 | 74 | 31 | 17 | 184 |
NcWRKY06 | GWHPAAYW012017 | Ⅰ | 832 | 88 126.14 | 5.42 | 75 | 83 | 38 | 636 |
NcWRKY07 | GWHPAAYW012284 | Ⅱc | 224 | 25 222.62 | 9.04 | 62 | 35 | 13 | 114 |
NcWRKY08 | GWHPAAYW012407 | Ⅲ | 194 | 21 868.50 | 7.67 | 51 | 43 | 12 | 88 |
NcWRKY09 | GWHPAAYW012566 | Ⅰ | 313 | 34 228.55 | 10.01 | 50 | 36 | 9 | 218 |
NcWRKY10 | GWHPAAYW013009 | Ⅰ | 316 | 34 251.61 | 9.3 | 48 | 60 | 14 | 194 |
NcWRKY11 | GWHPAAYW013286 | Ⅱe | 345 | 37 142.72 | 5.01 | 112 | 34 | 29 | 170 |
NcWRKY12 | GWHPAAYW013314 | Ⅱc | 208 | 23 139.17 | 8.94 | 59 | 26 | 14 | 109 |
NcWRKY13 | GWHPAAYW013362 | Ⅰ | 181 | 19 803.13 | 7.8 | 27 | 41 | 4 | 109 |
NcWRKY14 | GWHPAAYW014542 | Ⅰ | 816 | 87 750.28 | 5.25 | 92 | 95 | 28 | 601 |
NcWRKY15 | GWHPAAYW015340 | Ⅱd | 361 | 38 817.12 | 9.45 | 66 | 41 | 33 | 221 |
NcWRKY16 | GWHPAAYW016607 | Ⅱd | 337 | 36 359.40 | 9.68 | 83 | 35 | 26 | 193 |
NcWRKY17 | GWHPAAYW017157 | Ⅱa | 293 | 31 896.80 | 8.52 | 85 | 40 | 13 | 155 |
NcWRKY18 | GWHPAAYW017158 | Ⅱa | 315 | 33 882.86 | 6.62 | 114 | 45 | 13 | 143 |
NcWRKY19 | GWHPAAYW017159 | Ⅱa | 425 | 46 389.46 | 9.37 | 159 | 51 | 15 | 200 |
NcWRKY20 | GWHPAAYW017160 | Ⅱa | 315 | 33 832.56 | 6.61 | 88 | 45 | 10 | 172 |
NcWRKY21 | GWHPAAYW017161 | Ⅱa | 327 | 35 972.96 | 6.32 | 109 | 39 | 12 | 167 |
NcWRKY22 | GWHPAAYW017408 | Ⅰ | 1 209 | 13 726.21 | 8.92 | 382 | 238 | 107 | 482 |
NcWRKY23 | GWHPAAYW018263 | Ⅱc | 236 | 26 890.16 | 9.42 | 30 | 59 | 11 | 136 |
NcWRKY24 | GWHPAAYW018963 | Ⅱc | 325 | 35 439.54 | 5.19 | 76 | 45 | 12 | 192 |
NcWRKY25 | GWHPAAYW019317 | Ⅰ | 475 | 51 676.63 | 9.42 | 56 | 53 | 22 | 344 |
NcWRKY26 | GWHPAAYW019476 | Ⅱc | 292 | 32 449.26 | 6.84 | 80 | 37 | 15 | 160 |
NcWRKY27 | GWHPAAYW020087 | Ⅱd | 85 | 9 747.24 | 9.88 | 13 | 24 | 0 | 42 |
NcWRKY28 | GWHPAAYW020328 | Ⅲ | 301 | 33 205.85 | 4.87 | 91 | 44 | 15 | 151 |
NcWRKY29 | GWHPAAYW020329 | Ⅲ | 287 | 31 497.25 | 5.43 | 104 | 22 | 10 | 151 |
NcWRKY30 | GWHPAAYW020535 | Ⅱc | 326 | 35 958.21 | 9.38 | 85 | 40 | 14 | 187 |
NcWRKY31 | GWHPAAYW020992 | Ⅱb | 522 | 56 768.49 | 8.47 | 157 | 51 | 13 | 301 |
NcWRKY32 | GWHPAAYW020993 | Ⅱb | 550 | 59 854.45 | 6.3 | 128 | 60 | 19 | 343 |
NcWRKY33 | GWHPAAYW020994 | Ⅱb | 483 | 52 474.26 | 6.43 | 140 | 36 | 13 | 294 |
NcWRKY34 | GWHPAAYW021005 | Ⅱc | 390 | 44 581.80 | 5.73 | 67 | 50 | 26 | 247 |
NcWRKY35 | GWHPAAYW021006 | Ⅱc | 207 | 23 478.24 | 5.57 | 40 | 38 | 18 | 111 |
NcWRKY36 | GWHPAAYW021007 | Ⅱc | 336 | 38 210.70 | 7.54 | 39 | 58 | 29 | 210 |
NcWRKY37 | GWHPAAYW021021 | Ⅱc | 252 | 27 873.25 | 8.78 | 73 | 42 | 42 | 117 |
NcWRKY38 | GWHPAAYW021561 | Ⅱd | 300 | 33 420.36 | 9.71 | 77 | 31 | 13 | 179 |
NcWRKY39 | GWHPAAYW023351 | Ⅰ | 653 | 69 898.00 | 5.94 | 64 | 75 | 21 | 493 |
NcWRKY40 | GWHPAAYW023893 | Ⅱb | 536 | 57 654.27 | 6.48 | 149 | 44 | 16 | 327 |
NcWRKY41 | GWHPAAYW024187 | Ⅱc | 194 | 22 010.58 | 8.97 | 57 | 24 | 11 | 102 |
NcWRKY42 | GWHPAAYW024283 | Ⅰ | 614 | 66 224.72 | 6.19 | 79 | 73 | 31 | 431 |
NcWRKY43 | GWHPAAYW024356 | Ⅰ | 207 | 22 640.31 | 7.08 | 32 | 41 | 6 | 128 |
NcWRKY44 | GWHPAAYW024753 | Ⅰ | 541 | 57 521.59 | 7.34 | 55 | 70 | 26 | 390 |
NcWRKY45 | GWHPAAYW025120 | Ⅰ | 376 | 40 730.26 | 6.54 | 36 | 55 | 15 | 270 |
NcWRKY46 | GWHPAAYW025126 | Ⅰ | 314 | 34 201.39 | 8.97 | 38 | 41 | 14 | 221 |
NcWRKY47 | GWHPAAYW025139 | Ⅰ | 231 | 25 176.13 | 6.06 | 45 | 47 | 16 | 123 |
NcWRKY48 | GWHPAAYW025454 | Ⅱb | 496 | 53 858.63 | 5.15 | 126 | 56 | 23 | 291 |
NcWRKY49 | GWHPAAYW025832 | Ⅰ | 703 | 75 743.55 | 5.72 | 102 | 65 | 23 | 513 |
名称 Name | 位点 Locus | 亚家族 Subfamily | 蛋白质 长度/aa Protein length | 分子量 Molecular Weight | pI | α-螺旋 α-helix | 延伸链 Extended strand | β-折叠 β-turn | 无规则卷曲 Random coil |
NcWRKY50 | GWHPAAYW026703 | Ⅱe | 94 | 10 236.55 | 9.99 | 22 | 19 | 9 | 44 |
NcWRKY51 | GWHPAAYW027586 | Ⅱd | 289 | 31 308.83 | 9.85 | 58 | 26 | 12 | 193 |
NcWRKY52 | GWHPAAYW027773 | Ⅲ | 366 | 40 600.28 | 5.83 | 92 | 37 | 10 | 227 |
NcWRKY53 | GWHPAAYW004306 | Ⅱb | 473 | 51 009.43 | 5.11 | 153 | 61 | 20 | 239 |
NcWRKY54 | GWHPAAYW005049 | Ⅱb | 540 | 57 498.21 | 6.36 | 134 | 57 | 18 | 331 |
NcWRKY55 | GWHPAAYW005095 | Ⅰ | 605 | 65 201.75 | 7.75 | 57 | 59 | 12 | 477 |
NcWRKY56 | GWHPAAYW005338 | Ⅲ | 263 | 29 278.76 | 5.46 | 86 | 26 | 14 | 137 |
NcWRKY57 | GWHPAAYW005461 | Ⅱe | 255 | 28 218.34 | 5.41 | 41 | 35 | 12 | 167 |
NcWRKY58 | GWHPAAYW005491 | Ⅱc | 315 | 34 590.63 | 6.27 | 80 | 27 | 8 | 200 |
NcWRKY59 | GWHPAAYW006427 | Ⅱc | 317 | 35 052.79 | 6.42 | 57 | 30 | 11 | 219 |
NcWRKY60 | GWHPAAYW006549 | Ⅱe | 431 | 47 359.75 | 5.77 | 78 | 32 | 19 | 302 |
NcWRKY61 | GWHPAAYW007012 | Ⅱb | 557 | 59 663.54 | 6.11 | 156 | 39 | 11 | 351 |
NcWRKY62 | GWHPAAYW008691 | Ⅱd | 1 144 | 126 555.82 | 8.82 | 383 | 213 | 90 | 458 |
NcWRKY63 | GWHPAAYW009733 | Ⅱd | 73 | 8 382.87 | 9.82 | 9 | 15 | 4 | 45 |
NcWRKY64 | GWHPAAYW009825 | Ⅱe | 122 | 13 701.70 | 10.19 | 24 | 16 | 12 | 70 |
NcWRKY65 | GWHPAAYW009961 | Ⅱc | 199 | 21 660.89 | 6.94 | 46 | 27 | 6 | 120 |
NcWRKY66 | GWHPAAYW009962 | Ⅱe | 290 | 31 222.80 | 5.11 | 72 | 19 | 11 | 188 |
NcWRKY67 | GWHPAAYW010546 | Ⅱc | 230 | 25 695.79 | 6.59 | 47 | 40 | 9 | 134 |
NcWRKY68 | GWHPAAYW010567 | Ⅱb | 1 076 | 114 597.89 | 5.94 | 404 | 153 | 63 | 456 |
NcWRKY69 | GWHPAAYW010914 | Ⅱe | 445 | 47 724.61 | 5.12 | 87 | 35 | 21 | 302 |
Table 1 The identification and structural analysis of NcWRKY members in Nymphaea colorata
名称 Name | 位点 Locus | 亚家族 Subfamily | 蛋白质 长度/aa Protein length | 分子量 Molecular Weight | pI | α-螺旋 α-helix | 延伸链 Extended strand | β-折叠 β-turn | 无规则卷曲 Random coil |
---|---|---|---|---|---|---|---|---|---|
NcWRKY01 | GWHPAAYW001268 | Ⅱd | 299 | 33 359.08 | 9.69 | 67 | 29 | 12 | 191 |
NcWRKY02 | GWHPAAYW001468 | Ⅲ | 219 | 24 178.36 | 9.1 | 89 | 28 | 4 | 98 |
NcWRKY03 | GWHPAAYW002553 | Ⅱc | 262 | 28 583.02 | 8.78 | 61 | 45 | 25 | 131 |
NcWRKY04 | GWHPAAYW003267 | Ⅲ | 350 | 39 563.96 | 5.07 | 78 | 37 | 14 | 221 |
NcWRKY05 | GWHPAAYW011370 | Ⅱc | 306 | 33 839.58 | 6.31 | 74 | 31 | 17 | 184 |
NcWRKY06 | GWHPAAYW012017 | Ⅰ | 832 | 88 126.14 | 5.42 | 75 | 83 | 38 | 636 |
NcWRKY07 | GWHPAAYW012284 | Ⅱc | 224 | 25 222.62 | 9.04 | 62 | 35 | 13 | 114 |
NcWRKY08 | GWHPAAYW012407 | Ⅲ | 194 | 21 868.50 | 7.67 | 51 | 43 | 12 | 88 |
NcWRKY09 | GWHPAAYW012566 | Ⅰ | 313 | 34 228.55 | 10.01 | 50 | 36 | 9 | 218 |
NcWRKY10 | GWHPAAYW013009 | Ⅰ | 316 | 34 251.61 | 9.3 | 48 | 60 | 14 | 194 |
NcWRKY11 | GWHPAAYW013286 | Ⅱe | 345 | 37 142.72 | 5.01 | 112 | 34 | 29 | 170 |
NcWRKY12 | GWHPAAYW013314 | Ⅱc | 208 | 23 139.17 | 8.94 | 59 | 26 | 14 | 109 |
NcWRKY13 | GWHPAAYW013362 | Ⅰ | 181 | 19 803.13 | 7.8 | 27 | 41 | 4 | 109 |
NcWRKY14 | GWHPAAYW014542 | Ⅰ | 816 | 87 750.28 | 5.25 | 92 | 95 | 28 | 601 |
NcWRKY15 | GWHPAAYW015340 | Ⅱd | 361 | 38 817.12 | 9.45 | 66 | 41 | 33 | 221 |
NcWRKY16 | GWHPAAYW016607 | Ⅱd | 337 | 36 359.40 | 9.68 | 83 | 35 | 26 | 193 |
NcWRKY17 | GWHPAAYW017157 | Ⅱa | 293 | 31 896.80 | 8.52 | 85 | 40 | 13 | 155 |
NcWRKY18 | GWHPAAYW017158 | Ⅱa | 315 | 33 882.86 | 6.62 | 114 | 45 | 13 | 143 |
NcWRKY19 | GWHPAAYW017159 | Ⅱa | 425 | 46 389.46 | 9.37 | 159 | 51 | 15 | 200 |
NcWRKY20 | GWHPAAYW017160 | Ⅱa | 315 | 33 832.56 | 6.61 | 88 | 45 | 10 | 172 |
NcWRKY21 | GWHPAAYW017161 | Ⅱa | 327 | 35 972.96 | 6.32 | 109 | 39 | 12 | 167 |
NcWRKY22 | GWHPAAYW017408 | Ⅰ | 1 209 | 13 726.21 | 8.92 | 382 | 238 | 107 | 482 |
NcWRKY23 | GWHPAAYW018263 | Ⅱc | 236 | 26 890.16 | 9.42 | 30 | 59 | 11 | 136 |
NcWRKY24 | GWHPAAYW018963 | Ⅱc | 325 | 35 439.54 | 5.19 | 76 | 45 | 12 | 192 |
NcWRKY25 | GWHPAAYW019317 | Ⅰ | 475 | 51 676.63 | 9.42 | 56 | 53 | 22 | 344 |
NcWRKY26 | GWHPAAYW019476 | Ⅱc | 292 | 32 449.26 | 6.84 | 80 | 37 | 15 | 160 |
NcWRKY27 | GWHPAAYW020087 | Ⅱd | 85 | 9 747.24 | 9.88 | 13 | 24 | 0 | 42 |
NcWRKY28 | GWHPAAYW020328 | Ⅲ | 301 | 33 205.85 | 4.87 | 91 | 44 | 15 | 151 |
NcWRKY29 | GWHPAAYW020329 | Ⅲ | 287 | 31 497.25 | 5.43 | 104 | 22 | 10 | 151 |
NcWRKY30 | GWHPAAYW020535 | Ⅱc | 326 | 35 958.21 | 9.38 | 85 | 40 | 14 | 187 |
NcWRKY31 | GWHPAAYW020992 | Ⅱb | 522 | 56 768.49 | 8.47 | 157 | 51 | 13 | 301 |
NcWRKY32 | GWHPAAYW020993 | Ⅱb | 550 | 59 854.45 | 6.3 | 128 | 60 | 19 | 343 |
NcWRKY33 | GWHPAAYW020994 | Ⅱb | 483 | 52 474.26 | 6.43 | 140 | 36 | 13 | 294 |
NcWRKY34 | GWHPAAYW021005 | Ⅱc | 390 | 44 581.80 | 5.73 | 67 | 50 | 26 | 247 |
NcWRKY35 | GWHPAAYW021006 | Ⅱc | 207 | 23 478.24 | 5.57 | 40 | 38 | 18 | 111 |
NcWRKY36 | GWHPAAYW021007 | Ⅱc | 336 | 38 210.70 | 7.54 | 39 | 58 | 29 | 210 |
NcWRKY37 | GWHPAAYW021021 | Ⅱc | 252 | 27 873.25 | 8.78 | 73 | 42 | 42 | 117 |
NcWRKY38 | GWHPAAYW021561 | Ⅱd | 300 | 33 420.36 | 9.71 | 77 | 31 | 13 | 179 |
NcWRKY39 | GWHPAAYW023351 | Ⅰ | 653 | 69 898.00 | 5.94 | 64 | 75 | 21 | 493 |
NcWRKY40 | GWHPAAYW023893 | Ⅱb | 536 | 57 654.27 | 6.48 | 149 | 44 | 16 | 327 |
NcWRKY41 | GWHPAAYW024187 | Ⅱc | 194 | 22 010.58 | 8.97 | 57 | 24 | 11 | 102 |
NcWRKY42 | GWHPAAYW024283 | Ⅰ | 614 | 66 224.72 | 6.19 | 79 | 73 | 31 | 431 |
NcWRKY43 | GWHPAAYW024356 | Ⅰ | 207 | 22 640.31 | 7.08 | 32 | 41 | 6 | 128 |
NcWRKY44 | GWHPAAYW024753 | Ⅰ | 541 | 57 521.59 | 7.34 | 55 | 70 | 26 | 390 |
NcWRKY45 | GWHPAAYW025120 | Ⅰ | 376 | 40 730.26 | 6.54 | 36 | 55 | 15 | 270 |
NcWRKY46 | GWHPAAYW025126 | Ⅰ | 314 | 34 201.39 | 8.97 | 38 | 41 | 14 | 221 |
NcWRKY47 | GWHPAAYW025139 | Ⅰ | 231 | 25 176.13 | 6.06 | 45 | 47 | 16 | 123 |
NcWRKY48 | GWHPAAYW025454 | Ⅱb | 496 | 53 858.63 | 5.15 | 126 | 56 | 23 | 291 |
NcWRKY49 | GWHPAAYW025832 | Ⅰ | 703 | 75 743.55 | 5.72 | 102 | 65 | 23 | 513 |
名称 Name | 位点 Locus | 亚家族 Subfamily | 蛋白质 长度/aa Protein length | 分子量 Molecular Weight | pI | α-螺旋 α-helix | 延伸链 Extended strand | β-折叠 β-turn | 无规则卷曲 Random coil |
NcWRKY50 | GWHPAAYW026703 | Ⅱe | 94 | 10 236.55 | 9.99 | 22 | 19 | 9 | 44 |
NcWRKY51 | GWHPAAYW027586 | Ⅱd | 289 | 31 308.83 | 9.85 | 58 | 26 | 12 | 193 |
NcWRKY52 | GWHPAAYW027773 | Ⅲ | 366 | 40 600.28 | 5.83 | 92 | 37 | 10 | 227 |
NcWRKY53 | GWHPAAYW004306 | Ⅱb | 473 | 51 009.43 | 5.11 | 153 | 61 | 20 | 239 |
NcWRKY54 | GWHPAAYW005049 | Ⅱb | 540 | 57 498.21 | 6.36 | 134 | 57 | 18 | 331 |
NcWRKY55 | GWHPAAYW005095 | Ⅰ | 605 | 65 201.75 | 7.75 | 57 | 59 | 12 | 477 |
NcWRKY56 | GWHPAAYW005338 | Ⅲ | 263 | 29 278.76 | 5.46 | 86 | 26 | 14 | 137 |
NcWRKY57 | GWHPAAYW005461 | Ⅱe | 255 | 28 218.34 | 5.41 | 41 | 35 | 12 | 167 |
NcWRKY58 | GWHPAAYW005491 | Ⅱc | 315 | 34 590.63 | 6.27 | 80 | 27 | 8 | 200 |
NcWRKY59 | GWHPAAYW006427 | Ⅱc | 317 | 35 052.79 | 6.42 | 57 | 30 | 11 | 219 |
NcWRKY60 | GWHPAAYW006549 | Ⅱe | 431 | 47 359.75 | 5.77 | 78 | 32 | 19 | 302 |
NcWRKY61 | GWHPAAYW007012 | Ⅱb | 557 | 59 663.54 | 6.11 | 156 | 39 | 11 | 351 |
NcWRKY62 | GWHPAAYW008691 | Ⅱd | 1 144 | 126 555.82 | 8.82 | 383 | 213 | 90 | 458 |
NcWRKY63 | GWHPAAYW009733 | Ⅱd | 73 | 8 382.87 | 9.82 | 9 | 15 | 4 | 45 |
NcWRKY64 | GWHPAAYW009825 | Ⅱe | 122 | 13 701.70 | 10.19 | 24 | 16 | 12 | 70 |
NcWRKY65 | GWHPAAYW009961 | Ⅱc | 199 | 21 660.89 | 6.94 | 46 | 27 | 6 | 120 |
NcWRKY66 | GWHPAAYW009962 | Ⅱe | 290 | 31 222.80 | 5.11 | 72 | 19 | 11 | 188 |
NcWRKY67 | GWHPAAYW010546 | Ⅱc | 230 | 25 695.79 | 6.59 | 47 | 40 | 9 | 134 |
NcWRKY68 | GWHPAAYW010567 | Ⅱb | 1 076 | 114 597.89 | 5.94 | 404 | 153 | 63 | 456 |
NcWRKY69 | GWHPAAYW010914 | Ⅱe | 445 | 47 724.61 | 5.12 | 87 | 35 | 21 | 302 |
ID | 序列 | 长度/aa |
---|---|---|
Sequence | Length | |
motif 1 | ILDDGYRWRKYGQKVVKGNPYPRSYYRCT | 29 |
motif 2 | PGCPVRKQVZRASEDPSIVITTYEGKHNH | 29 |
motif 3 | RPSEDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCQVKKKVERSHDGLVTEIIYKGTHNHPKPQPSRR | 67 |
motif 4 | NTNMQVSLNPVMLMPPNQIEVNRALPYSRGPDAVSLDLGVGISQAAENSSLHKQNQAEADSMLRQVHGGNAPSSGINCPVQSAGILPFYGNGIMGNRPDHYRVKEEDGQNFNF | 113 |
motif 5 | EREPRVAFQTMSEVD | 15 |
motif 6 | LKAEVGRVKEENERLKRMLSRICKSYKALQMQFASLIQS | 39 |
motif 7 | AAAVASAJASDPSFTAALAAAJSSIIG | 27 |
motif 8 | PLPVQATAMASTTSAAASMLLSGSSSST | 28 |
motif 9 | DVPTSSSTNRETSAPMAVQNL | 21 |
motif 10 | GRCHCSKRRKSRVKRVIRVPAISSKLAD | 28 |
motif 11 | MEEVEEANKAAVECCHRLIAVLAQPQEGLEWKGVMGLTGEALMKFRKVVSLLNHKAGHARFRRGSTQSPPRQKICMENPKLGLDPAAPKVYPEPPQCPPHPQAPNPHFQFLQQMKLQADLLYRRSNSSINLKFDNSSCTPTMSSTRSFMSSLSMDGSVANMDGKGFCLIGPASSQDRISHQQKRKCSGKGEDG | 193 |
motif 12 | MSSLNNFHRGTGRFMLGSEVDASHAQQFT | 29 |
motif 13 | ECPYVIYYITPQHDCDVGVISAAQIPFVSHGAPCAGRQGFY | 41 |
motif 14 | LAEPSPTTGTFSFRPCNAGFNSGLVSNAFSSSWNVSKKHYLGDGSGPGSFVFKPREEASSSVGALAVVNSNPEKNQNFGQCQGYSEPQASIKIEAMAVSAKDLSLSVATSEAPACGAASNSITPANPSSDELNVRRGPDAETQHVSLDQKGAPLTVVE | 158 |
motif 15 | SDSLGDEGDEGEPESKRRKME | 21 |
motif 16 | VCTDLPAYTPEIFPAAENDSCFQLQDILDFCDPLIDGELFEGLEMDGNLQIPTSDSNQPNKIGDSQAKKQRGECSSRKRK | 80 |
motif 17 | QGRAFNQLEABGTPELSSLSTSDDEGDED | 29 |
motif 18 | DQAQQPHAKKARVSVRARCD | 20 |
motif 19 | SSSASISVSPSYPTITLDLTQTSSPPZF | 28 |
motif 20 | GSPVALSLVMLKPPNHIENGRAPLFPTASNVVSLDLGVGIG | 41 |
Table 2 Motif information of NcWRKY through the MEME program
ID | 序列 | 长度/aa |
---|---|---|
Sequence | Length | |
motif 1 | ILDDGYRWRKYGQKVVKGNPYPRSYYRCT | 29 |
motif 2 | PGCPVRKQVZRASEDPSIVITTYEGKHNH | 29 |
motif 3 | RPSEDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCQVKKKVERSHDGLVTEIIYKGTHNHPKPQPSRR | 67 |
motif 4 | NTNMQVSLNPVMLMPPNQIEVNRALPYSRGPDAVSLDLGVGISQAAENSSLHKQNQAEADSMLRQVHGGNAPSSGINCPVQSAGILPFYGNGIMGNRPDHYRVKEEDGQNFNF | 113 |
motif 5 | EREPRVAFQTMSEVD | 15 |
motif 6 | LKAEVGRVKEENERLKRMLSRICKSYKALQMQFASLIQS | 39 |
motif 7 | AAAVASAJASDPSFTAALAAAJSSIIG | 27 |
motif 8 | PLPVQATAMASTTSAAASMLLSGSSSST | 28 |
motif 9 | DVPTSSSTNRETSAPMAVQNL | 21 |
motif 10 | GRCHCSKRRKSRVKRVIRVPAISSKLAD | 28 |
motif 11 | MEEVEEANKAAVECCHRLIAVLAQPQEGLEWKGVMGLTGEALMKFRKVVSLLNHKAGHARFRRGSTQSPPRQKICMENPKLGLDPAAPKVYPEPPQCPPHPQAPNPHFQFLQQMKLQADLLYRRSNSSINLKFDNSSCTPTMSSTRSFMSSLSMDGSVANMDGKGFCLIGPASSQDRISHQQKRKCSGKGEDG | 193 |
motif 12 | MSSLNNFHRGTGRFMLGSEVDASHAQQFT | 29 |
motif 13 | ECPYVIYYITPQHDCDVGVISAAQIPFVSHGAPCAGRQGFY | 41 |
motif 14 | LAEPSPTTGTFSFRPCNAGFNSGLVSNAFSSSWNVSKKHYLGDGSGPGSFVFKPREEASSSVGALAVVNSNPEKNQNFGQCQGYSEPQASIKIEAMAVSAKDLSLSVATSEAPACGAASNSITPANPSSDELNVRRGPDAETQHVSLDQKGAPLTVVE | 158 |
motif 15 | SDSLGDEGDEGEPESKRRKME | 21 |
motif 16 | VCTDLPAYTPEIFPAAENDSCFQLQDILDFCDPLIDGELFEGLEMDGNLQIPTSDSNQPNKIGDSQAKKQRGECSSRKRK | 80 |
motif 17 | QGRAFNQLEABGTPELSSLSTSDDEGDED | 29 |
motif 18 | DQAQQPHAKKARVSVRARCD | 20 |
motif 19 | SSSASISVSPSYPTITLDLTQTSSPPZF | 28 |
motif 20 | GSPVALSLVMLKPPNHIENGRAPLFPTASNVVSLDLGVGIG | 41 |
复制类型 | 复制基因1 | 复制基因2 | 亚家族 | Ka | Ks | Ka/Ks |
---|---|---|---|---|---|---|
Duplicated type | Duplicated gene 1 | Duplicated gene 2 | Subfamily | |||
片段复制 | NcWRKY02 | NcWRKY08 | Ⅲ | 0.6235 | 1.6690 | 0.3735 |
Segmental duplication | NcWRKY01 | NcWRKY38 | Ⅱd | 0.0884 | 0.9775 | 0.0905 |
NcWRKY03 | NcWRKY37 | Ⅱc | 0.3228 | 2.0820 | 0.1549 | |
NcWRKY06 | NcWRKY14 | Ⅰ | 0.2384 | 0.9139 | 0.2609 | |
NcWRKY09 | NcWRKY25 | Ⅰ | 0.3501 | 1.0760 | 0.3252 | |
NcWRKY07 | NcWRKY41 | Ⅱc | 0.2282 | 2.1670 | 0.1052 | |
NcWRKY05 | NcWRKY59 | Ⅱc | 0.2031 | 1.0310 | 0.1969 | |
NcWRKY11 | NcWRKY66 | Ⅱe | 0.2233 | 1.4330 | 0.1557 | |
NcWRKY12 | NcWRKY65 | Ⅱc | 0.3091 | 1.8660 | 0.1655 | |
NcWRKY16 | NcWRKY51 | Ⅱd | 0.1750 | 0.9797 | 0.1786 | |
NcWRKY30 | NcWRKY58 | Ⅱc | 0.3375 | 0.9217 | 0.3662 | |
NcWRKY28 | NcWRKY56 | Ⅲ | 0.3797 | 1.0670 | 0.3556 | |
NcWRKY31 | NcWRKY68 | Ⅱb | 0.3438 | 1.4880 | 0.2309 | |
NcWRKY48 | NcWRKY53 | Ⅱb | 0.2196 | 1.0670 | 0.2058 | |
NcWRKY50 | NcWRKY64 | Ⅱe | 0.2693 | 1.3330 | 0.2020 | |
串联复制 Tandem duplication | NcWRKY18 | NcWRKY20 | Ⅱa | 0.1617 | 0.6405 | 0.2525 |
Table 3 Ka and Ks analysis for the duplicated NcWRKY in Nymphaea colorata
复制类型 | 复制基因1 | 复制基因2 | 亚家族 | Ka | Ks | Ka/Ks |
---|---|---|---|---|---|---|
Duplicated type | Duplicated gene 1 | Duplicated gene 2 | Subfamily | |||
片段复制 | NcWRKY02 | NcWRKY08 | Ⅲ | 0.6235 | 1.6690 | 0.3735 |
Segmental duplication | NcWRKY01 | NcWRKY38 | Ⅱd | 0.0884 | 0.9775 | 0.0905 |
NcWRKY03 | NcWRKY37 | Ⅱc | 0.3228 | 2.0820 | 0.1549 | |
NcWRKY06 | NcWRKY14 | Ⅰ | 0.2384 | 0.9139 | 0.2609 | |
NcWRKY09 | NcWRKY25 | Ⅰ | 0.3501 | 1.0760 | 0.3252 | |
NcWRKY07 | NcWRKY41 | Ⅱc | 0.2282 | 2.1670 | 0.1052 | |
NcWRKY05 | NcWRKY59 | Ⅱc | 0.2031 | 1.0310 | 0.1969 | |
NcWRKY11 | NcWRKY66 | Ⅱe | 0.2233 | 1.4330 | 0.1557 | |
NcWRKY12 | NcWRKY65 | Ⅱc | 0.3091 | 1.8660 | 0.1655 | |
NcWRKY16 | NcWRKY51 | Ⅱd | 0.1750 | 0.9797 | 0.1786 | |
NcWRKY30 | NcWRKY58 | Ⅱc | 0.3375 | 0.9217 | 0.3662 | |
NcWRKY28 | NcWRKY56 | Ⅲ | 0.3797 | 1.0670 | 0.3556 | |
NcWRKY31 | NcWRKY68 | Ⅱb | 0.3438 | 1.4880 | 0.2309 | |
NcWRKY48 | NcWRKY53 | Ⅱb | 0.2196 | 1.0670 | 0.2058 | |
NcWRKY50 | NcWRKY64 | Ⅱe | 0.2693 | 1.3330 | 0.2020 | |
串联复制 Tandem duplication | NcWRKY18 | NcWRKY20 | Ⅱa | 0.1617 | 0.6405 | 0.2525 |
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