Acta Horticulturae Sinica ›› 2021, Vol. 48 ›› Issue (7): 1371-1385.doi: 10.16420/j.issn.0513-353x.2021-0205
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JIA Huixia1, LI Xixiang1, SONG Jiangping1, LIN Yu’e2, ZHANG Xiaohui1, QIU Yang1, YANG Wenlong1, LOU Qunfeng3, WANG Haiping1,*()
Received:
2021-02-22
Revised:
2021-04-06
Online:
2021-07-25
Published:
2021-08-10
Contact:
WANG Haiping
E-mail:wanghaiping@caas.cn
CLC Number:
JIA Huixia, LI Xixiang, SONG Jiangping, LIN Yu’e, ZHANG Xiaohui, QIU Yang, YANG Wenlong, LOU Qunfeng, WANG Haiping. Genome-Wide Association Study of Powdery Mildew Resistance of Cucumber Core Germplasms[J]. Acta Horticulturae Sinica, 2021, 48(7): 1371-1385.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2021-0205
国家 Country | 省 Province | 样本数 Number of samples | 国家 Country | 样本数 Number of samples |
---|---|---|---|---|
中国China | 广东Guangdong | 39 | 美国America | 10 |
北京Beijing | 14 | 日本Japan | 7 | |
山东Shandong | 14 | 印度India | 6 | |
辽宁Liaoning | 12 | 德国Germany | 5 | |
云南Yunnan | 12 | 俄罗斯Russia | 4 | |
吉林Jilin | 11 | 土耳其Turkey | 3 | |
河北Hebei | 9 | 匈牙利Hungary | 3 | |
四川Sichuan | 7 | 伊朗Iran | 3 | |
天津Tianjin | 7 | 阿富汗Afghanistan | 2 | |
河南Henan | 5 | 荷兰Holland | 2 | |
湖北Hubei | 5 | 挪威Norway | 2 | |
湖南Hunan | 5 | 西班牙Spain | 2 | |
福建Fujian | 3 | 叙利亚Syria | 2 | |
黑龙江Heilongjiang | 3 | 以色列Israel | 2 | |
内蒙Inner Mongolia | 3 | 埃及Egypt | 1 | |
山西Shanxi | 3 | 巴基斯坦Pakistan | 1 | |
安徽Anhui | 2 | 波多黎各Puerto Rico | 1 | |
贵州Guizhou | 2 | 丹麦Denmark | 1 | |
新疆Xinjiang | 2 | 哈萨克斯坦Kazakhstan | 1 | |
重庆Chongqing | 2 | 津巴布韦Zimbabwe | 1 | |
广西Guangxi | 1 | 克罗地亚Croatia | 1 | |
江苏Jiangsu | 1 | 肯尼亚Kenya | 1 | |
江西Jiangxi | 1 | 毛里求斯Mauritius | 1 | |
昆明Kunming | 1 | 尼泊尔Nepal | 1 | |
宁夏Ningxia | 1 | 塞尔维亚Serbia | 1 | |
泰国Thailand | 1 | |||
希腊Greece | 1 |
Table 1 Cucumber materials for resistance identification of powdery mildew
国家 Country | 省 Province | 样本数 Number of samples | 国家 Country | 样本数 Number of samples |
---|---|---|---|---|
中国China | 广东Guangdong | 39 | 美国America | 10 |
北京Beijing | 14 | 日本Japan | 7 | |
山东Shandong | 14 | 印度India | 6 | |
辽宁Liaoning | 12 | 德国Germany | 5 | |
云南Yunnan | 12 | 俄罗斯Russia | 4 | |
吉林Jilin | 11 | 土耳其Turkey | 3 | |
河北Hebei | 9 | 匈牙利Hungary | 3 | |
四川Sichuan | 7 | 伊朗Iran | 3 | |
天津Tianjin | 7 | 阿富汗Afghanistan | 2 | |
河南Henan | 5 | 荷兰Holland | 2 | |
湖北Hubei | 5 | 挪威Norway | 2 | |
湖南Hunan | 5 | 西班牙Spain | 2 | |
福建Fujian | 3 | 叙利亚Syria | 2 | |
黑龙江Heilongjiang | 3 | 以色列Israel | 2 | |
内蒙Inner Mongolia | 3 | 埃及Egypt | 1 | |
山西Shanxi | 3 | 巴基斯坦Pakistan | 1 | |
安徽Anhui | 2 | 波多黎各Puerto Rico | 1 | |
贵州Guizhou | 2 | 丹麦Denmark | 1 | |
新疆Xinjiang | 2 | 哈萨克斯坦Kazakhstan | 1 | |
重庆Chongqing | 2 | 津巴布韦Zimbabwe | 1 | |
广西Guangxi | 1 | 克罗地亚Croatia | 1 | |
江苏Jiangsu | 1 | 肯尼亚Kenya | 1 | |
江西Jiangxi | 1 | 毛里求斯Mauritius | 1 | |
昆明Kunming | 1 | 尼泊尔Nepal | 1 | |
宁夏Ningxia | 1 | 塞尔维亚Serbia | 1 | |
泰国Thailand | 1 | |||
希腊Greece | 1 |
染色体 Chromosome | 显著关联 信号 Significantly associated signals | SNP位置/bp SNP Position | 基因型 Genotype | SNP注释 SNP annotation | P值 P value | |||
---|---|---|---|---|---|---|---|---|
2017- Beijing | 2018- Beijing | 2017- Guangzhou | 2018- Guangzhou | |||||
Chr1 | pm1.1 | 20 946 043 | A/C | 基因间区 Intergenic | 7.34E-07 | |||
20 946 325 | C/T | 基因间区 Intergenic | 1.72E-08 | |||||
20 946 384 | C/T | 基因间区 Intergenic | 6.04E-08 | |||||
20 946 425 | A/G | 基因间区 Intergenic | 2.44E-07 | |||||
20 946 565 | C/T | 基因间区 Intergenic | 1.67E-08 | |||||
20 947 445 | T/C | 基因间区 Intergenic | 2.13E-08 | |||||
20 947 746 | G/T | 基因间区 Intergenic | 4.18E-08 | |||||
20 947 997 | G/A | 基因间区 Intergenic | 1.53E-08 | |||||
20 948 176 | T/A | 基因间区 Intergenic | 4.91E-09 | |||||
20 948 443 | C/T | 基因间区 Intergenic | 3.54E-08 | |||||
20 949 791 | A/G | 上游区 Upstream | 2.41E-08 | |||||
20 950 222 | T/C | 内含子区 Intronic | 1.17E-08 | |||||
20 950 313 | T/C | 内含子区 Intronic | 6.97E-07 | 1.17E-08 | ||||
20 951 178 | T/C | 内含子区 Intronic | 9.50E-08 | |||||
20 951 719 | G/A | 内含子区 Intronic | 2.86E-08 | |||||
20 951 938 | G/A | 内含子区 Intronic | 2.45E-08 | |||||
20 952 168 | T/C | 内含子区 Intronic | 1.43E-08 | |||||
20 952 590 | A/G | 内含子区 Intronic | 3.64E-08 | 1.59E-09 | ||||
20 952 617 | G/A | 内含子区 Intronic | 8.71E-08 | 1.24E-09 | ||||
20 953 029 | T/C | 内含子区 Intronic | 7.98E-09 | |||||
20 953 187 | T/C | 内含子区 Intronic | 9.32E-09 | |||||
20 953 655 | A/C | 内含子区 Intronic | 5.23E-09 | |||||
20 954 157 | T/C | 内含子区 Intronic | 1.21E-07 | 3.17E-09 | ||||
20 955 127 | T/C | 内含子区 Intronic | 8.56E-08 | |||||
20 955 284 | T/A | 内含子区 Intronic | 6.32E-10 | |||||
20 955 289 | G/A | 内含子区 Intronic | 3.57E-07 | 1.25E-09 | ||||
20 955 466 | A/C | 内含子区 Intronic | 3.12E-07 | 8.79E-09 | ||||
20 955 556 | G/A | 内含子区 Intronic | 1.78E-07 | 4.36E-09 | ||||
20 956 182 | A/C | 外显子区(同义突变)Exonic(synonymous) | 1.43E-08 | |||||
20 956 822 | T/A | 内含子区 Intronic | 1.34E-08 | |||||
20 959 137 | G/A | 下游区 Downstream | 7.29E-07 | |||||
20 960 732 | T/C | 内含子区 Intronic | 7.54E-08 | |||||
20 960 788 | C/T | 内含子区 Intronic | 2.25E-08 | |||||
20 961 611 | A/C | 内含子区 Intronic | 1.23E-08 | |||||
20 963 321 | A/G | 上游区/下游区 Upstream/Downstream | 2.31E-07 | |||||
20 963 487 | A/G | 上游区/下游区 Upstream/Downstream | 5.23E-07 | 3.40E-09 | ||||
20 963 500 | T/C | 上游区/下游区 Upstream/Downstream | 6.56E-08 | |||||
20 964 042 | A/G | 内含子区 Intronic | 9.32E-07 | |||||
20 964 068 | T/C | 内含子区 Intronic | 9.32E-07 | |||||
20 964 073 | T/G | 内含子区 Intronic | 1.79E-07 | |||||
20 964 207 | A/G | 内含子区 Intronic | 1.51E-07 | |||||
20 965 920 | G/C | 内含子区 Intronic | 1.30E-07 | |||||
20 966 914 | T/A | 上游区 Upstream | 3.98E-07 | |||||
20 967 021 | C/T | 上游区 Upstream | 8.88E-07 | |||||
pm1.2 | 21 133 564 | C/T | 基因间区 Intergenic | 4.74E-07 | ||||
pm1.3 | 21 453 973 | T/C | 内含子区 Intronic | 6.68E-07 | ||||
21 454 062 | A/G | 内含子区 Intronic | 5.04E-07 | |||||
21 459 154 | T/C | 基因间区Intergenic | 7.54E-07 | |||||
21 459 157 | G/A | 基因间区Intergenic | 2.46E-07 | |||||
21 459 889 | A/T | 上游区 Upstream | 1.46E-07 | |||||
21 459 973 | C/T | 上游区 Upstream | 1.29E-07 | |||||
21 461 960 | A/G | 内含子区 Intronic | 1.74E-07 | |||||
染色体 Chromosome | 显著关联 信号 Significantly associated signals | SNP位置/bp SNP Position | 基因型 Genotype | SNP注释 SNP annotation | P值 P value | |||
2017- Beijing | 2018- Beijing | 2017- Guangzhou | 2018- Guangzhou | |||||
Chr5 | pm5.1 | 1 858 575 | C/T | 上游区 Upstream | 4.14E-08 | |||
pm5.2 | 7 910 694 | C/T | 基因间区 Intergenic | 3.20E-07 | ||||
pm5.3 | 15 769 974 | G/C | 基因间区 Intergenic | 9.23E-07 | ||||
pm5.4 | 16 149 984 | G/A | 内含子区 Intronic | 5.83E-07 | ||||
pm5.5 | 16 316 760 | T/A | 内含子区 Intronic | 1.13E-07 | ||||
16 327 596 | G/C | 内含子区 Intronic | 6.55E-07 | |||||
pm5.6 | 16 357 208 | T/C | 内含子区 Intronic | 4.66E-07 | ||||
16 380 085 | A/T | 内含子区 Intronic | 1.38E-08 | |||||
16 390 016 | G/A | 上游区 Upstream | 2.96E-07 | |||||
pm5.7 | 16 666 839 | C/G | 基因间区 Intergenic | 4.64E-07 | 5.95E-08 | |||
16 676 542 | G/C | 外显子区(非同义突变Exonic(Nonsynonymous) | 2.44E-10 | 2.70E-07 | ||||
16 683 577 | C/A | 基因间区 Intergenic | 2.24E-08 | 4.22E-11 | ||||
pm5.8 | 22 992 521 | A/G | 基因间区 Intergenic | 3.44E-08 | ||||
22 992 567 | A/T | 基因间区 Intergenic | 3.34E-07 | |||||
22 993 739 | T/A | 基因间区 Intergenic | 8.32E-07 | |||||
Chr6 | pm6.1 | 15 844 016 | T/G | 基因间区 Intergenic | 6.97E-07 |
Table 2 SNPs associated with powdery mildew resistance
染色体 Chromosome | 显著关联 信号 Significantly associated signals | SNP位置/bp SNP Position | 基因型 Genotype | SNP注释 SNP annotation | P值 P value | |||
---|---|---|---|---|---|---|---|---|
2017- Beijing | 2018- Beijing | 2017- Guangzhou | 2018- Guangzhou | |||||
Chr1 | pm1.1 | 20 946 043 | A/C | 基因间区 Intergenic | 7.34E-07 | |||
20 946 325 | C/T | 基因间区 Intergenic | 1.72E-08 | |||||
20 946 384 | C/T | 基因间区 Intergenic | 6.04E-08 | |||||
20 946 425 | A/G | 基因间区 Intergenic | 2.44E-07 | |||||
20 946 565 | C/T | 基因间区 Intergenic | 1.67E-08 | |||||
20 947 445 | T/C | 基因间区 Intergenic | 2.13E-08 | |||||
20 947 746 | G/T | 基因间区 Intergenic | 4.18E-08 | |||||
20 947 997 | G/A | 基因间区 Intergenic | 1.53E-08 | |||||
20 948 176 | T/A | 基因间区 Intergenic | 4.91E-09 | |||||
20 948 443 | C/T | 基因间区 Intergenic | 3.54E-08 | |||||
20 949 791 | A/G | 上游区 Upstream | 2.41E-08 | |||||
20 950 222 | T/C | 内含子区 Intronic | 1.17E-08 | |||||
20 950 313 | T/C | 内含子区 Intronic | 6.97E-07 | 1.17E-08 | ||||
20 951 178 | T/C | 内含子区 Intronic | 9.50E-08 | |||||
20 951 719 | G/A | 内含子区 Intronic | 2.86E-08 | |||||
20 951 938 | G/A | 内含子区 Intronic | 2.45E-08 | |||||
20 952 168 | T/C | 内含子区 Intronic | 1.43E-08 | |||||
20 952 590 | A/G | 内含子区 Intronic | 3.64E-08 | 1.59E-09 | ||||
20 952 617 | G/A | 内含子区 Intronic | 8.71E-08 | 1.24E-09 | ||||
20 953 029 | T/C | 内含子区 Intronic | 7.98E-09 | |||||
20 953 187 | T/C | 内含子区 Intronic | 9.32E-09 | |||||
20 953 655 | A/C | 内含子区 Intronic | 5.23E-09 | |||||
20 954 157 | T/C | 内含子区 Intronic | 1.21E-07 | 3.17E-09 | ||||
20 955 127 | T/C | 内含子区 Intronic | 8.56E-08 | |||||
20 955 284 | T/A | 内含子区 Intronic | 6.32E-10 | |||||
20 955 289 | G/A | 内含子区 Intronic | 3.57E-07 | 1.25E-09 | ||||
20 955 466 | A/C | 内含子区 Intronic | 3.12E-07 | 8.79E-09 | ||||
20 955 556 | G/A | 内含子区 Intronic | 1.78E-07 | 4.36E-09 | ||||
20 956 182 | A/C | 外显子区(同义突变)Exonic(synonymous) | 1.43E-08 | |||||
20 956 822 | T/A | 内含子区 Intronic | 1.34E-08 | |||||
20 959 137 | G/A | 下游区 Downstream | 7.29E-07 | |||||
20 960 732 | T/C | 内含子区 Intronic | 7.54E-08 | |||||
20 960 788 | C/T | 内含子区 Intronic | 2.25E-08 | |||||
20 961 611 | A/C | 内含子区 Intronic | 1.23E-08 | |||||
20 963 321 | A/G | 上游区/下游区 Upstream/Downstream | 2.31E-07 | |||||
20 963 487 | A/G | 上游区/下游区 Upstream/Downstream | 5.23E-07 | 3.40E-09 | ||||
20 963 500 | T/C | 上游区/下游区 Upstream/Downstream | 6.56E-08 | |||||
20 964 042 | A/G | 内含子区 Intronic | 9.32E-07 | |||||
20 964 068 | T/C | 内含子区 Intronic | 9.32E-07 | |||||
20 964 073 | T/G | 内含子区 Intronic | 1.79E-07 | |||||
20 964 207 | A/G | 内含子区 Intronic | 1.51E-07 | |||||
20 965 920 | G/C | 内含子区 Intronic | 1.30E-07 | |||||
20 966 914 | T/A | 上游区 Upstream | 3.98E-07 | |||||
20 967 021 | C/T | 上游区 Upstream | 8.88E-07 | |||||
pm1.2 | 21 133 564 | C/T | 基因间区 Intergenic | 4.74E-07 | ||||
pm1.3 | 21 453 973 | T/C | 内含子区 Intronic | 6.68E-07 | ||||
21 454 062 | A/G | 内含子区 Intronic | 5.04E-07 | |||||
21 459 154 | T/C | 基因间区Intergenic | 7.54E-07 | |||||
21 459 157 | G/A | 基因间区Intergenic | 2.46E-07 | |||||
21 459 889 | A/T | 上游区 Upstream | 1.46E-07 | |||||
21 459 973 | C/T | 上游区 Upstream | 1.29E-07 | |||||
21 461 960 | A/G | 内含子区 Intronic | 1.74E-07 | |||||
染色体 Chromosome | 显著关联 信号 Significantly associated signals | SNP位置/bp SNP Position | 基因型 Genotype | SNP注释 SNP annotation | P值 P value | |||
2017- Beijing | 2018- Beijing | 2017- Guangzhou | 2018- Guangzhou | |||||
Chr5 | pm5.1 | 1 858 575 | C/T | 上游区 Upstream | 4.14E-08 | |||
pm5.2 | 7 910 694 | C/T | 基因间区 Intergenic | 3.20E-07 | ||||
pm5.3 | 15 769 974 | G/C | 基因间区 Intergenic | 9.23E-07 | ||||
pm5.4 | 16 149 984 | G/A | 内含子区 Intronic | 5.83E-07 | ||||
pm5.5 | 16 316 760 | T/A | 内含子区 Intronic | 1.13E-07 | ||||
16 327 596 | G/C | 内含子区 Intronic | 6.55E-07 | |||||
pm5.6 | 16 357 208 | T/C | 内含子区 Intronic | 4.66E-07 | ||||
16 380 085 | A/T | 内含子区 Intronic | 1.38E-08 | |||||
16 390 016 | G/A | 上游区 Upstream | 2.96E-07 | |||||
pm5.7 | 16 666 839 | C/G | 基因间区 Intergenic | 4.64E-07 | 5.95E-08 | |||
16 676 542 | G/C | 外显子区(非同义突变Exonic(Nonsynonymous) | 2.44E-10 | 2.70E-07 | ||||
16 683 577 | C/A | 基因间区 Intergenic | 2.24E-08 | 4.22E-11 | ||||
pm5.8 | 22 992 521 | A/G | 基因间区 Intergenic | 3.44E-08 | ||||
22 992 567 | A/T | 基因间区 Intergenic | 3.34E-07 | |||||
22 993 739 | T/A | 基因间区 Intergenic | 8.32E-07 | |||||
Chr6 | pm6.1 | 15 844 016 | T/G | 基因间区 Intergenic | 6.97E-07 |
显著关联信号 Significantly associated signals | LD区段/bp LD block | 候选基因ID Candidate genes ID | 功能注释 Functional annotation |
---|---|---|---|
pm1.1 | Chr1:20 913 000 ~ | Csa1G569320 | 泛素蛋白连接酶RFI2 E3 ubiquitin-protein ligase RFI2 |
21 000 000 | Csa1G569330 | 丝氨酸/精氨酸富集剪接因子SR30 Serine/arginine-rich splicing factor SR30 | |
Csa1G569340 | 嘌呤渗透酶11 Probable purine permease 11 | ||
Csa1G569350 | 磷酸葡萄糖胺变位酶 Phosphoglucosamine mutase | ||
Csa1G569360 | 缺氧诱导蛋白 Hypoxia induced protein | ||
Csa1G569370 | SOSS复合体亚基B同系物 SOSS complex subunit B homolog | ||
Csa1G569380 | 60S核糖体蛋白L22-2 60S Ribosomal protein L22-2 | ||
Csa1G569390 | 内质网膜蛋白复合体亚基6 ER membrane protein complex subunit 6 | ||
Csa1G569400 | 休眠相关蛋白3 Dormancy-associated protein 3 | ||
Csa1G569410 | Tafazzin蛋白 Tafazzin protein | ||
Csa1G569420 | 未知蛋白Unknown protein | ||
Csa1G569430 | 橡胶延长因子Rubber elongation factor | ||
Csa1G569440 | 重金属相关异戊二烯化植物蛋白 Heavy metal-associated isoprenylated plant protein | ||
Csa1G569450 | 呼吸爆发氧化酶同源蛋白B Respiratory burst oxidase homolog protein B | ||
Csa1G569460 | Formin蛋白11 Formin protein 11 | ||
pm1.2 | Chr1:21 130 000 ~ | Csa1G570200 | 短链脱氢酶/还原酶 Short-chain dehydrogenase/reductase |
21 137 000 | Csa1G570210 | 核糖体生物发生蛋白类BRX1蛋白 Ribosome biogenesis protein BRX1-like protein | |
pm1.3 | Chr1:21 452 000 ~ | Csa1G573670 | 不依赖sec移位酶TATA Sec-independent translocase protein TATA |
21 468 000 | Csa1G573680 | 转录因子 bHLH transcription factor bHLH(UNE12) | |
pm5.1 | Chr5:1 800 000 ~ | Csa5G055570 | 未知蛋白 Unknown protein |
1 886 000 | Csa5G056070 | 未知蛋白 Unknown protein | |
Csa5G056080 | 富含羟脯氨酸糖蛋白Hydroxyproline-rich glycoprotein-like protein | ||
Csa5G056090 | 富含羟脯氨酸糖蛋白Hydroxyproline-rich glycoprotein-like protein | ||
Csa5G056100 | 邻氨基苯甲酸盐合酶β亚单元Anthranilate synthase beta subunit 2 | ||
Csa5G056110 | 未知蛋白 Unknown protein | ||
Csa5G056610 | 未知蛋白 Unknown protein | ||
Csa5G056620 | 3-(3-羟苯基)丙酸盐/3-羟基桂皮酸羟化酶3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase | ||
Csa5G056630 | 香豆素酰基辅酶a:花青素3-O-葡萄糖-6"-O-香豆素酰基转移酶 2 Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2 | ||
pm5.2 | Chr5:7 910 000 ~ | Csa5G180870 | RNA结合蛋白 RNA binding protein |
7 921 000 | Csa5G180880 | 三角状五肽重复蛋白Pentatricopeptide repeat-containing protein | |
pm5.3 | Chr5:15 700 000 ~ | Csa5G431540 | 花期控制蛋白 Flowering time control protein FY |
15 847 000 | Csa5G432540 | 泛素羧基末端水解酶 Ubiquitin carboxyl-terminal hydrolase | |
Csa5G432550 | 泛素羧基末端水解酶 Ubiquitin carboxyl-terminal hydrolase | ||
Csa5G434550 | 双因子响应调节蛋白 Two-component response regulator ORR10 | ||
Csa5G435050 | DNA定向RNA聚合酶V亚单位1 DNA-directed RNA polymerase V subunit 1 | ||
Csa5G435060 | 未知蛋白 Unknown protein | ||
Csa5G435070 | 磷脂酰肌醇4-磷酸5-激酶6 Phosphatidylinositol 4-phosphate 5-kinase 6 | ||
Csa5G435080 | 醌氧化还原酶NAD(P)H:quinone oxidoreductase | ||
pm5.4 | Chr5:16 130 000 ~ | Csa5G456730 | 尿苷5'-磷酸合酶 Uridine 5'-monophosphate synthase |
16 170 000 | Csa5G457230 | ADP核糖基化因子GTP激活蛋白AGD11 同类型X1蛋白 ADP-ribosylation factor GTPase-activating protein AGD11 isoform X1 | |
Csa5G457240 | 对红光的敏感性降低蛋白 Sensitivity to red light reduced protein | ||
pm5.5 | Chr5:16 312 000 ~ | Csa5G466330 | rRNA-加工蛋白质UTP23 rRNA-processing protein UTP23 |
16 354 000 | Csa5G466340 | 未知蛋白Unknown protein | |
Csa5G466350 | 富含脯氨酸受体蛋白激酶PERK10 Proline-rich receptor-like protein kinase PERK10 | ||
Csa5G466360 | L型凝集素结构域的受体激酶L-type lectin-domain containing receptor kinase | ||
pm5.6 | Chr5:16 355 000 ~ 16 382 000 | Csa5G466370 | 组氨酸生物合成双功能蛋白hisIE Histidine biosynthesis bifunctional protein hisIE |
Csa5G466870 | 40S核糖体蛋白S27 40S ribosomal protein S27 | ||
显著关联信号 Significantly associated signals | LD区段/bp LD block | 候选基因ID Candidate genes ID | 功能注释 Functional annotation |
pm5.7 | Chr5:16 665 000 ~ 16 706 000 | Csa5G471600 | 异嗜性和多嗜性逆转录病毒受体蛋白 Xenotropic and polytropic retrovirus receptor protein |
Csa5G472100 | 肽基脯氨酸顺反式异构酶NIMA相互作用蛋白4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 | ||
pm5.8 | Chr5:22 994 000 ~ | Csa5G606690 | 三角状五肽重复蛋白 Pentatricopeptide repeat-containing protein |
23 053 000 | Csa5G606700 | 未知蛋白 Unknown protein | |
Csa5G606710 | 未知蛋白 Unknown protein | ||
Csa5G606720 | 未知蛋白 Unknown protein | ||
Csa5G606730 | Ninja家族蛋白 Ninja-family protein AFP3 | ||
Csa5G606740 | 天冬酰胺合成酶蛋白 Asparagine synthetase domain-containing protein 1 | ||
Csa5G606750 | 细胞分裂控制蛋白48同源物B Cell division control protein 48 homolog B | ||
Csa5G606760 | 核糖体成熟因子rimP Ribosome maturation factor rimP | ||
Csa5G606770 | 6-磷酸葡萄糖酸内酯酶1 6-phosphogluconolactonase 1 | ||
Csa5G606780 | CRABS CLAW蛋白CRABS CLAW protein | ||
Csa5G606790 | 类大谷粒蛋白EBIG GRAIN 1-like E | ||
pm6.1 | Chr6:15 801 000 ~ | Csa6G351870 | 细胞壁连接的类受体激酶3 Wall-associated receptor kinase 3 |
15 847 000 | Csa6G352870 | 细胞壁连接的类受体激酶2 Wall-associated receptor kinase 2 | |
Csa6G354370 | 细胞壁连接的类受体激酶5 Wall-associated receptor kinase 5-like |
Table 3 Candidate genes associated with powdery mildew resistantance
显著关联信号 Significantly associated signals | LD区段/bp LD block | 候选基因ID Candidate genes ID | 功能注释 Functional annotation |
---|---|---|---|
pm1.1 | Chr1:20 913 000 ~ | Csa1G569320 | 泛素蛋白连接酶RFI2 E3 ubiquitin-protein ligase RFI2 |
21 000 000 | Csa1G569330 | 丝氨酸/精氨酸富集剪接因子SR30 Serine/arginine-rich splicing factor SR30 | |
Csa1G569340 | 嘌呤渗透酶11 Probable purine permease 11 | ||
Csa1G569350 | 磷酸葡萄糖胺变位酶 Phosphoglucosamine mutase | ||
Csa1G569360 | 缺氧诱导蛋白 Hypoxia induced protein | ||
Csa1G569370 | SOSS复合体亚基B同系物 SOSS complex subunit B homolog | ||
Csa1G569380 | 60S核糖体蛋白L22-2 60S Ribosomal protein L22-2 | ||
Csa1G569390 | 内质网膜蛋白复合体亚基6 ER membrane protein complex subunit 6 | ||
Csa1G569400 | 休眠相关蛋白3 Dormancy-associated protein 3 | ||
Csa1G569410 | Tafazzin蛋白 Tafazzin protein | ||
Csa1G569420 | 未知蛋白Unknown protein | ||
Csa1G569430 | 橡胶延长因子Rubber elongation factor | ||
Csa1G569440 | 重金属相关异戊二烯化植物蛋白 Heavy metal-associated isoprenylated plant protein | ||
Csa1G569450 | 呼吸爆发氧化酶同源蛋白B Respiratory burst oxidase homolog protein B | ||
Csa1G569460 | Formin蛋白11 Formin protein 11 | ||
pm1.2 | Chr1:21 130 000 ~ | Csa1G570200 | 短链脱氢酶/还原酶 Short-chain dehydrogenase/reductase |
21 137 000 | Csa1G570210 | 核糖体生物发生蛋白类BRX1蛋白 Ribosome biogenesis protein BRX1-like protein | |
pm1.3 | Chr1:21 452 000 ~ | Csa1G573670 | 不依赖sec移位酶TATA Sec-independent translocase protein TATA |
21 468 000 | Csa1G573680 | 转录因子 bHLH transcription factor bHLH(UNE12) | |
pm5.1 | Chr5:1 800 000 ~ | Csa5G055570 | 未知蛋白 Unknown protein |
1 886 000 | Csa5G056070 | 未知蛋白 Unknown protein | |
Csa5G056080 | 富含羟脯氨酸糖蛋白Hydroxyproline-rich glycoprotein-like protein | ||
Csa5G056090 | 富含羟脯氨酸糖蛋白Hydroxyproline-rich glycoprotein-like protein | ||
Csa5G056100 | 邻氨基苯甲酸盐合酶β亚单元Anthranilate synthase beta subunit 2 | ||
Csa5G056110 | 未知蛋白 Unknown protein | ||
Csa5G056610 | 未知蛋白 Unknown protein | ||
Csa5G056620 | 3-(3-羟苯基)丙酸盐/3-羟基桂皮酸羟化酶3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase | ||
Csa5G056630 | 香豆素酰基辅酶a:花青素3-O-葡萄糖-6"-O-香豆素酰基转移酶 2 Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2 | ||
pm5.2 | Chr5:7 910 000 ~ | Csa5G180870 | RNA结合蛋白 RNA binding protein |
7 921 000 | Csa5G180880 | 三角状五肽重复蛋白Pentatricopeptide repeat-containing protein | |
pm5.3 | Chr5:15 700 000 ~ | Csa5G431540 | 花期控制蛋白 Flowering time control protein FY |
15 847 000 | Csa5G432540 | 泛素羧基末端水解酶 Ubiquitin carboxyl-terminal hydrolase | |
Csa5G432550 | 泛素羧基末端水解酶 Ubiquitin carboxyl-terminal hydrolase | ||
Csa5G434550 | 双因子响应调节蛋白 Two-component response regulator ORR10 | ||
Csa5G435050 | DNA定向RNA聚合酶V亚单位1 DNA-directed RNA polymerase V subunit 1 | ||
Csa5G435060 | 未知蛋白 Unknown protein | ||
Csa5G435070 | 磷脂酰肌醇4-磷酸5-激酶6 Phosphatidylinositol 4-phosphate 5-kinase 6 | ||
Csa5G435080 | 醌氧化还原酶NAD(P)H:quinone oxidoreductase | ||
pm5.4 | Chr5:16 130 000 ~ | Csa5G456730 | 尿苷5'-磷酸合酶 Uridine 5'-monophosphate synthase |
16 170 000 | Csa5G457230 | ADP核糖基化因子GTP激活蛋白AGD11 同类型X1蛋白 ADP-ribosylation factor GTPase-activating protein AGD11 isoform X1 | |
Csa5G457240 | 对红光的敏感性降低蛋白 Sensitivity to red light reduced protein | ||
pm5.5 | Chr5:16 312 000 ~ | Csa5G466330 | rRNA-加工蛋白质UTP23 rRNA-processing protein UTP23 |
16 354 000 | Csa5G466340 | 未知蛋白Unknown protein | |
Csa5G466350 | 富含脯氨酸受体蛋白激酶PERK10 Proline-rich receptor-like protein kinase PERK10 | ||
Csa5G466360 | L型凝集素结构域的受体激酶L-type lectin-domain containing receptor kinase | ||
pm5.6 | Chr5:16 355 000 ~ 16 382 000 | Csa5G466370 | 组氨酸生物合成双功能蛋白hisIE Histidine biosynthesis bifunctional protein hisIE |
Csa5G466870 | 40S核糖体蛋白S27 40S ribosomal protein S27 | ||
显著关联信号 Significantly associated signals | LD区段/bp LD block | 候选基因ID Candidate genes ID | 功能注释 Functional annotation |
pm5.7 | Chr5:16 665 000 ~ 16 706 000 | Csa5G471600 | 异嗜性和多嗜性逆转录病毒受体蛋白 Xenotropic and polytropic retrovirus receptor protein |
Csa5G472100 | 肽基脯氨酸顺反式异构酶NIMA相互作用蛋白4 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 | ||
pm5.8 | Chr5:22 994 000 ~ | Csa5G606690 | 三角状五肽重复蛋白 Pentatricopeptide repeat-containing protein |
23 053 000 | Csa5G606700 | 未知蛋白 Unknown protein | |
Csa5G606710 | 未知蛋白 Unknown protein | ||
Csa5G606720 | 未知蛋白 Unknown protein | ||
Csa5G606730 | Ninja家族蛋白 Ninja-family protein AFP3 | ||
Csa5G606740 | 天冬酰胺合成酶蛋白 Asparagine synthetase domain-containing protein 1 | ||
Csa5G606750 | 细胞分裂控制蛋白48同源物B Cell division control protein 48 homolog B | ||
Csa5G606760 | 核糖体成熟因子rimP Ribosome maturation factor rimP | ||
Csa5G606770 | 6-磷酸葡萄糖酸内酯酶1 6-phosphogluconolactonase 1 | ||
Csa5G606780 | CRABS CLAW蛋白CRABS CLAW protein | ||
Csa5G606790 | 类大谷粒蛋白EBIG GRAIN 1-like E | ||
pm6.1 | Chr6:15 801 000 ~ | Csa6G351870 | 细胞壁连接的类受体激酶3 Wall-associated receptor kinase 3 |
15 847 000 | Csa6G352870 | 细胞壁连接的类受体激酶2 Wall-associated receptor kinase 2 | |
Csa6G354370 | 细胞壁连接的类受体激酶5 Wall-associated receptor kinase 5-like |
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