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Acta Horticulturae Sinica ›› 2021, Vol. 48 ›› Issue (7): 1371-1385.doi: 10.16420/j.issn.0513-353x.2021-0205

• Research Papars • Previous Articles     Next Articles

Genome-Wide Association Study of Powdery Mildew Resistance of Cucumber Core Germplasms

JIA Huixia1, LI Xixiang1, SONG Jiangping1, LIN Yu’e2, ZHANG Xiaohui1, QIU Yang1, YANG Wenlong1, LOU Qunfeng3, WANG Haiping1,*()   

  1. 1Institute of Vegetables and Flowers,Chinese Academy of Agricultural Sciences/Key Laboratory of Horticultural Crop Biology and Germplasm Creation in the Ministry of Agriculture,Beijing 100081,China
    2Guangdong Key Laboratory for New Technology Research of Vegetables,Vegetable Research Institute,Guangdong Academy of Agricultural Sciences,Guangzhou 510640,China
    3State Key Laboratory of Crop Genetics and Germplasm Enhancement,College of Horticulture,Nanjing Agricultural University,Nanjing 210095,China
  • Received:2021-02-22 Revised:2021-04-06 Online:2021-07-25 Published:2021-08-10
  • Contact: WANG Haiping E-mail:wanghaiping@caas.cn

Abstract:

In this study,231 cucumber core germplasms collected from the world were used for resistance identification of powdery mildew in Beijing and Guangzhou in 2017 and 2018,respectively. A total of 950 382 SNPs detected by genome re-sequencing were used for genome-wide association analysis. The results showed that the natural incidence of cucumber powdery mildew in Guangzhou was significantly higher than that in Beijing. High correlation was detected between the two-year disease index among different germplasms. Based on the mixed linear model,12 significantly associated signals were detected,and they distributed on chromosomes 1,5 and 6. Among them,pm1.1 was detected repeatedly in two-year in Beijing,while pm5.7 was detected repeatedly in two-year in Guangzhou. These significantly associated signals contained 68 SNPs that exceeded the threshold of-log10(P value) with 6.0. Among them,a non-synonymous mutant SNP(Chr5:16 676 542)located on the exon of xenotropic and polytropic retrovirus receptor(Csa5G471600). A total of 63 candidate genes were found in the LD block of SNPs associated with powdery mildew resistance,among which seven candidate genes showed significant differential expression after being infected with powdery mildew in the cucumber material with high resistance.

Key words: cucumber, powdery mildew, genome-wide association study, single nucleotide polymorphism, candidate gene

CLC Number: