Acta Horticulturae Sinica ›› 2021, Vol. 48 ›› Issue (2): 233-242.doi: 10.16420/j.issn.0513-353x.2020-0350
• Research Papers • Previous Articles Next Articles
MEI Chuang1, ZHANG Xiaoyan2, YAN Peng1,*(), Aisajan Mamat1, FENG Beibei1, MA Kai1, HAN Liqun1, DONG Lianxin2, WANG Jixun1,*()
Received:
2020-11-29
Revised:
2021-01-18
Online:
2021-02-25
Published:
2021-03-09
Contact:
YAN Peng,WANG Jixun
E-mail:xaasyysyp@163.com;ee_wjx@163.com
CLC Number:
MEI Chuang, ZHANG Xiaoyan, YAN Peng, Aisajan Mamat, FENG Beibei, MA Kai, HAN Liqun, DONG Lianxin, WANG Jixun. Identification of TIFY Family in Apple and Their Expression Analysis Under Insect Stress[J]. Acta Horticulturae Sinica, 2021, 48(2): 233-242.
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URL: https://www.ahs.ac.cn/EN/10.16420/j.issn.0513-353x.2020-0350
物种 Species | 基因名 Gene name | 基因号 Gene ID | 物种 Species | 基因名 Gene name | 基因号 Gene ID |
---|---|---|---|---|---|
拟南芥 Arabidopsis thaliana | AthTIFY11A | AT1G17380.1 | 番茄 Solanum lycoperiscon | SLTIFY5A | Solyc01g097060.2 |
AthTIFY10A | AT1G19180.1 | SLTIFY10A | Solyc01g103600.2 | ||
AthTIFY11B | AT1G72450.1 | SLTIFY10b | Solyc03g122190.2 | ||
AthTIFY10B | AT1G74950.1 | SLTIFY8 | Solyc06g065650.2 | ||
AthTIFY3A | AT3G43440.1 | SLTIFY10b-A | Solyc07g042170.2 | ||
AthTIFY8 | AT4G32570.1 | SLTIFY5A-a | Solyc08g036620.2 | ||
AthTIFY3B | AT5G20900.1 | SLTIFY5A-b | Solyc08g036640.2 | ||
水稻 Oryza sativa | OsTIFY11a | Os03t0180800-01 | SLTIFY5A-c | Solyc08g036660.2 | |
OsTIFY11c | Os03t0180900-01 | SLTIFY10b-B | Solyc12g009220.1 | ||
OsTIFY11b | Os03t0181100-01 | SLTIFY10b-C | Solyc12g049400.1 | ||
OsTIFY11g | Os03t0396500-00 | 葡萄 Vitis vinifera | VvTIFY5A | VIT_04s0008g00110.t01 | |
OsTIFY10a | Os03t0402800-01 | VvTIFY8 | VIT_04s0008g04950.t01 | ||
OsTIFY3 | Os04t0653000-01 | VvTIFY10A | VIT_09s0002g00890.t01 | ||
OsTIFY5 | Os07t0153000-00 | VvTIFY5A-a | VIT_10s0003g03790.t01 | ||
OsTIFY10b | Os07t0615200-01 | VvTIFY5A-b | VIT_10s0003g03800.t01 | ||
OsTIFY10c | Os09t0439200-01 | VvTIFY5A-c | VIT_10s0003g03810.t01 | ||
OsTIFY11e | Os10t0391400-01 | VvTIFY5A-d | VIT_01s0011g05560.t01 | ||
OsTIFY11d | Os10t0392400-01 | VvTIFY10A-a | VIT_11s0016g00710.t01 | ||
VvTIFY10A-b | VIT_12s0035g00900.t01 |
Table 1 Gene ID information in phylogenetic analysis
物种 Species | 基因名 Gene name | 基因号 Gene ID | 物种 Species | 基因名 Gene name | 基因号 Gene ID |
---|---|---|---|---|---|
拟南芥 Arabidopsis thaliana | AthTIFY11A | AT1G17380.1 | 番茄 Solanum lycoperiscon | SLTIFY5A | Solyc01g097060.2 |
AthTIFY10A | AT1G19180.1 | SLTIFY10A | Solyc01g103600.2 | ||
AthTIFY11B | AT1G72450.1 | SLTIFY10b | Solyc03g122190.2 | ||
AthTIFY10B | AT1G74950.1 | SLTIFY8 | Solyc06g065650.2 | ||
AthTIFY3A | AT3G43440.1 | SLTIFY10b-A | Solyc07g042170.2 | ||
AthTIFY8 | AT4G32570.1 | SLTIFY5A-a | Solyc08g036620.2 | ||
AthTIFY3B | AT5G20900.1 | SLTIFY5A-b | Solyc08g036640.2 | ||
水稻 Oryza sativa | OsTIFY11a | Os03t0180800-01 | SLTIFY5A-c | Solyc08g036660.2 | |
OsTIFY11c | Os03t0180900-01 | SLTIFY10b-B | Solyc12g009220.1 | ||
OsTIFY11b | Os03t0181100-01 | SLTIFY10b-C | Solyc12g049400.1 | ||
OsTIFY11g | Os03t0396500-00 | 葡萄 Vitis vinifera | VvTIFY5A | VIT_04s0008g00110.t01 | |
OsTIFY10a | Os03t0402800-01 | VvTIFY8 | VIT_04s0008g04950.t01 | ||
OsTIFY3 | Os04t0653000-01 | VvTIFY10A | VIT_09s0002g00890.t01 | ||
OsTIFY5 | Os07t0153000-00 | VvTIFY5A-a | VIT_10s0003g03790.t01 | ||
OsTIFY10b | Os07t0615200-01 | VvTIFY5A-b | VIT_10s0003g03800.t01 | ||
OsTIFY10c | Os09t0439200-01 | VvTIFY5A-c | VIT_10s0003g03810.t01 | ||
OsTIFY11e | Os10t0391400-01 | VvTIFY5A-d | VIT_01s0011g05560.t01 | ||
OsTIFY11d | Os10t0392400-01 | VvTIFY10A-a | VIT_11s0016g00710.t01 | ||
VvTIFY10A-b | VIT_12s0035g00900.t01 |
基因 Gene | 基因号 Gene ID | 基因组位置 Genomic position | 开放阅读框/bp ORF | 蛋白大小/aa Protein size | 外显子 Number of exons |
---|---|---|---|---|---|
MdTIFY1 | MD02G1096100 | Chr02:7600659..7602728+ | 843 | 280 | 5 |
MdTIFY2 | MD15G1220400 | Chr15:17843310..17845336+ | 837 | 278 | 5 |
MdTIFY3 | MD14G1238100 | Chr14:31732049..31736399- | 1 134 | 377 | 7 |
MdTIFY4 | MD16G1020800 | Chr16:1492513..1504489+ | 1 128 | 375 | 7 |
MdTIFY5 | MD06G1228900 | Chr06:35860218..35864674- | 1 188 | 395 | 7 |
MdTIFY6 | MD15G1225800 | Chr15:18345401..18348150+ | 621 | 206 | 5 |
MdTIFY7 | MD02G1105900 | Chr02:8591750 8594168 | 633 | 210 | 5 |
MdTIFY8 | MD13G1030000 | Chr13:2164003..2166858+ | 1 149 | 382 | 7 |
MdTIFY9 | MD09G1178600 | Chr09:15274688..15275998- | 615 | 204 | 2 |
MdTIFY10 | MD15G1434400 | Chr15:53470255..53474071+ | 810 | 269 | 5 |
MdTIFY11 | MD16G1199200 | Chr16:18010085..18014820+ | 1 026 | 341 | 9 |
MdTIFY12 | MD13G1199500 | Chr13:17721679..17726448+ | 1 050 | 349 | 9 |
MdTIFY13 | MD08G1137500 | Chr08:13179781..13184749+ | 1 338 | 445 | 8 |
MdTIFY14 | MD15G1116100 | Chr15:8188285..8192990+ | 1 350 | 449 | 7 |
MdTIFY15 | MD16G1127400 | Chr16:9274777..9277069+ | 636 | 211 | 4 |
MdTIFY16 | MD13G1127100 | Chr15:9515820..9518542+ | 630 | 209 | 4 |
Table 2 Basic information of theTIFY family in apple plant
基因 Gene | 基因号 Gene ID | 基因组位置 Genomic position | 开放阅读框/bp ORF | 蛋白大小/aa Protein size | 外显子 Number of exons |
---|---|---|---|---|---|
MdTIFY1 | MD02G1096100 | Chr02:7600659..7602728+ | 843 | 280 | 5 |
MdTIFY2 | MD15G1220400 | Chr15:17843310..17845336+ | 837 | 278 | 5 |
MdTIFY3 | MD14G1238100 | Chr14:31732049..31736399- | 1 134 | 377 | 7 |
MdTIFY4 | MD16G1020800 | Chr16:1492513..1504489+ | 1 128 | 375 | 7 |
MdTIFY5 | MD06G1228900 | Chr06:35860218..35864674- | 1 188 | 395 | 7 |
MdTIFY6 | MD15G1225800 | Chr15:18345401..18348150+ | 621 | 206 | 5 |
MdTIFY7 | MD02G1105900 | Chr02:8591750 8594168 | 633 | 210 | 5 |
MdTIFY8 | MD13G1030000 | Chr13:2164003..2166858+ | 1 149 | 382 | 7 |
MdTIFY9 | MD09G1178600 | Chr09:15274688..15275998- | 615 | 204 | 2 |
MdTIFY10 | MD15G1434400 | Chr15:53470255..53474071+ | 810 | 269 | 5 |
MdTIFY11 | MD16G1199200 | Chr16:18010085..18014820+ | 1 026 | 341 | 9 |
MdTIFY12 | MD13G1199500 | Chr13:17721679..17726448+ | 1 050 | 349 | 9 |
MdTIFY13 | MD08G1137500 | Chr08:13179781..13184749+ | 1 338 | 445 | 8 |
MdTIFY14 | MD15G1116100 | Chr15:8188285..8192990+ | 1 350 | 449 | 7 |
MdTIFY15 | MD16G1127400 | Chr16:9274777..9277069+ | 636 | 211 | 4 |
MdTIFY16 | MD13G1127100 | Chr15:9515820..9518542+ | 630 | 209 | 4 |
Fig. 2 Analysis of TIFY family in apple A:Phylogenetic analysis,different colors represent a clustered group;B:The exon-intron structure of the genes;C:Alignment analysis of amino acid sequence.
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