https://www.ahs.ac.cn/images/0513-353X/images/top-banner1.jpg|#|苹果
https://www.ahs.ac.cn/images/0513-353X/images/top-banner2.jpg|#|甘蓝
https://www.ahs.ac.cn/images/0513-353X/images/top-banner3.jpg|#|菊花
https://www.ahs.ac.cn/images/0513-353X/images/top-banner4.jpg|#|灵芝
https://www.ahs.ac.cn/images/0513-353X/images/top-banner5.jpg|#|桃
https://www.ahs.ac.cn/images/0513-353X/images/top-banner6.jpg|#|黄瓜
https://www.ahs.ac.cn/images/0513-353X/images/top-banner7.jpg|#|蝴蝶兰
https://www.ahs.ac.cn/images/0513-353X/images/top-banner8.jpg|#|樱桃
https://www.ahs.ac.cn/images/0513-353X/images/top-banner9.jpg|#|观赏荷花
https://www.ahs.ac.cn/images/0513-353X/images/top-banner10.jpg|#|菊花
https://www.ahs.ac.cn/images/0513-353X/images/top-banner11.jpg|#|月季
https://www.ahs.ac.cn/images/0513-353X/images/top-banner12.jpg|#|菊花

园艺学报 ›› 2009, Vol. 36 ›› Issue (4): 493-500.

• 果树 • 上一篇    下一篇

利用基因组步行方法克隆柑橘黄龙病病原菌亚洲种序列

廖惠红1,2;李杨瑞1,3*;彭宏祥2;白先进3;杨丽涛1; 徐 宁2   

  1. (1广西大学农学院, 南宁530004; 2 广西农业科学院园艺研究所, 南宁530007; 3 广西作物遗传改良生物技术重点开放实验室, 南宁530007)
  • 收稿日期:2008-12-29 修回日期:2009-03-03 出版日期:2009-04-25 发布日期:2009-04-25
  • 通讯作者: 李杨瑞

Sequences Cloning of Candidatus Liberibactor asiaticus Associated withHuanglongbing Using Genomic Walking Method

LIAO Hui-hong1,2,LI Yang-rui1,3*,PENG Hong-xiang2,BAI Xian-jin3,YANG Li-tao1,and XU Ning2   

  1. (1Agriculture College, Guangxi University, Nanning 530004, China; 2Horticulture Research Institute, Guangxi Academy of Agricultural Sciences, Nanning 530007, China; 3Guangxi Crop Genetic Improvement and Biotechnology Lab, Nanning 530007,China)
  • Received:2008-12-29 Revised:2009-03-03 Online:2009-04-25 Published:2009-04-25
  • Contact: LI Yang-rui

摘要: 对NCBI基因库黄龙病亚洲种病原菌序列进行拼接, 并根据拼接结果在rplKAJL-rpoBC, 16S/
23S rRNA和omp 3个位点上设计引物, 采用基因组步行方法, 在其亚洲种3个位点上共获得了15 168 bp非冗余新序列, 其中, 在rplKAJL-rpoBC位点上5′端上游区和3′端下游区分别获得了3 218和2 653 bp的非冗余新序列; 在16S/23S rRNA 位点上5′端上游区和3′端下游区分别延伸了1 853和2 459 bp的新序列; 在omp基因位点上分别获得了4 014和971 bp的新序列。序列分析表明在rplKAJL-rpoBC位点上的新序列包含2个新基因(suhB和serA); 16S/23S rRNA位点新序列包含4个新基因(膜转运蛋白基因、细胞壁脱氢酶假基因、5S rRNA、tRNAMet ) , omp位点新序列包含6个新基因(rpsB、tsfpyrH、frrcdsA2、cds2) 。这些新序列的获得为以PCR为基础的黄龙病相关研究提供了有用的参考依据。

关键词: 柑橘, 黄龙病, Candidatus Liberibactor, 序列

Abstract: Huanglongbing (HLB) , previously known as greening disease, is probably the most serious disease in citrus. The presumptive causal agent is believed to be a non-cultured, phloem-restricted α-proteobacterium. Currently, there are three Candidatus Liberibactor spp. associated with citrus Huanglongbing
(HLB) disease, Ca. Liberibactor asiaticus, Ca. Liberibactor africanus and Ca. L iberibactor am ericanus. In this study, a genomic walkingmethod was used to obtain new sequences extended from previously known loci,
rplKAJL-rpoBC, 16S/23S rRNA and outermembrane protein (omp) of Ca. L iberibactor asia ticus. In rplKA-JL-rpoBC locus, 3 218 bp of new sequenceswere obtained at the 5′up stream end and 2 653 bp at the 3′down2
stream. Totally, fragments about 1 853 bp and 2 459 bp were also acquired from 5′up stream and 3′down-stream of 16S/23S rRNA region, respectively. Similarly, in om p locus, fragment about 4 014 bp were obtained at 5′up stream and 971 bp at 3′downstream, respectively. Genomic walking approach was used in this study, and totally 15 168 bp non2redundancy sequences from asiaticus specieswere obtained. Sequence analysis shows that there are two new genes (suhB and serA) at the rplKAJL-rpoBC gene cluster locus, four new
genes ( transmembrane p rotein gene, cell wall hydrolase pseudogene, 5S ribosomal RNA and tRNAMet ) extended from the 16S/23S rRNA gene locus and six new genes (rpsB, tsf, pyrH, frr, cdsA2, cds2) at the omp locus. These new sequences obtained in this study will facilitate the PCR2based HLB research.

Key words: citrus, Huanglongbing, Candidatus Liberibactor, sequence

中图分类号: