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园艺学报 ›› 2015, Vol. 42 ›› Issue (2): 271-279.doi: 10.16420/j.issn.0513-353x.2014-0789

• 蔬菜 • 上一篇    下一篇

番茄LemiR390及其预测靶基因LeTAS3的鉴定与表达分析

于丽丽,刘伟伟,方媛,周莹,王如意,李洋,周波   

  1. 东北林业大学生命科学学院,哈尔滨 150040
  • 出版日期:2015-02-25 发布日期:2015-02-25
  • 基金资助:
    东北林业大学国家基础科学人才培养基金项目(201220A5);国家自然科学基金项目(30800082,31272200);中央高校基本科研业务费专项资金项目(DL11CA03,2572014EA03-02)

Identification and Expression Character Analysis of LemiR390 and Its Potential Target LeTAS3 in Tomato

YU Li-li,LIU Wei-wei,FANG Yuan,ZHOU Ying,WANG Ru-yi,LI Yang,and ZHOU Bo   

  1. College of Life Science,Northeast Forestry University,Harbin 150040,China
  • Online:2015-02-25 Published:2015-02-25

摘要: 以番茄(Lycopersicon esculentum)紫色花青素积累品系Aft基因型‘LA1996’为试验材料,以番茄总RNA反转录的cDNA文库为模板,根据mirbase数据库中MIR390基因和番茄unigene数据库预测到的靶基因序列,克隆番茄LemiR390前体基因及其预测靶基因LeTAS3;采用定量PCR技术检测LemiR390及其预测靶基因LeTAS3在番茄果实不同发育阶段的表达情况,利用RLM 5′RACE技术验证LemiR390对靶基因mRNA的剪切作用。结果表明,克隆到两个LemiR390的前体,分别与MIR390a和MIR390b一致,含有完整的茎环结构。LemiR390与其靶基因LeTAS3在番茄果实不同发育时期表达量不同,果实发育前期特别是花后1 ~ 2周幼果期表达量高,发育后期均下降为微量表达,并且在幼果期LemiR390与LeTAS3表达呈负调控关系。LemiR390能够靶作用于LeTAS3的转录本调控其降解,其剪切位点为LemiR390序列5′端的第10位碱基。

关键词: 番茄, LemiR390, LeTAS3, 基因表达, miRNA

Abstract: In this research,tomato(Lycopersicon esculentum)cultivar LA1996 was used as materials. Based on the sequence of MIR390 in mirbase and unigene database of tomato,fragments of premiR390 and potential target LeTAS3 were obtained through PCR using cDNA as template. Transcript levels of LemiR390 and its potential target gene LeTAS3 in tomato fruits were determined by real-time quantitative PCR. LemiR390 guided-cleavage and target site for the putative Trans-Acting SiRNA3(LeTAS3)mRNA was validated using RLM-5′RACE. The results showed that two precursors of miR390 were obtained,with sequences that were consistent with MIR390b and MIR390a and able to form a hairpin structure. Expression of LemiR390 and its target gene LeTAS3 in tomato fruits differed in developmental stage. During the early stage,especially 1–2 weeks after flowering,the transcription levels of LemiR390 and LeTAS3 were high,and LemiR390 negatively regulated the expression of LeTAS3;However,in late stage(3–7 weeks after flowering),their expression levels were low. The mature LemiR390 targeted a sequence of high complementarity in LeTAS3 mRNA and sheared the 10th site of LeTAS4 mRNA from the LemiR390 5? end.

Key words: tomato, LemiR390, LeTAS3, gene expression, miRNA

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