https://www.ahs.ac.cn/images/0513-353X/images/top-banner1.jpg|#|苹果
https://www.ahs.ac.cn/images/0513-353X/images/top-banner2.jpg|#|甘蓝
https://www.ahs.ac.cn/images/0513-353X/images/top-banner3.jpg|#|菊花
https://www.ahs.ac.cn/images/0513-353X/images/top-banner4.jpg|#|灵芝
https://www.ahs.ac.cn/images/0513-353X/images/top-banner5.jpg|#|桃
https://www.ahs.ac.cn/images/0513-353X/images/top-banner6.jpg|#|黄瓜
https://www.ahs.ac.cn/images/0513-353X/images/top-banner7.jpg|#|蝴蝶兰
https://www.ahs.ac.cn/images/0513-353X/images/top-banner8.jpg|#|樱桃
https://www.ahs.ac.cn/images/0513-353X/images/top-banner9.jpg|#|观赏荷花
https://www.ahs.ac.cn/images/0513-353X/images/top-banner10.jpg|#|菊花
https://www.ahs.ac.cn/images/0513-353X/images/top-banner11.jpg|#|月季
https://www.ahs.ac.cn/images/0513-353X/images/top-banner12.jpg|#|菊花

园艺学报 ›› 2014, Vol. 41 ›› Issue (11): 2196-2207.

• 果树 • 上一篇    下一篇

梨反转录转座子逆转录酶序列预测及其进化和转录分析

蒋 爽,蔡丹英,滕元文*   

  1. 浙江大学园艺系,农业部园艺植物生长发育与品质调控重点开放实验室,杭州 310058
  • 收稿日期:2014-07-08 出版日期:2014-11-25 发布日期:2014-11-25
  • 基金资助:

    国家自然科学基金项目(31201592)

Prediction,Evolution and Expression Analysis of Reverse Transcriptase of LTR Retrotransposons in Pear

JIANG Shuang,CAI Dan-ying,and TENG Yuan-wen*   

  1. Department of Horticulture,The State Agricultural Ministry Laboratory of Horticultural Plant Growth,Development & Quality Improvement,Zhejiang University,Hangzhou 310058,China
  • Received:2014-07-08 Online:2014-11-25 Published:2014-11-25

摘要: 基于生物信息学方法对‘酥梨’基因组中不同类型的逆转录酶进行预测,共获得345条copia类和99条gypsy类逆转录酶。通过系统聚类,copia类逆转录酶可分为Ivana、Ale、TAR、Angela、Maximus和Bianca等6类;gypsy类逆转录酶可分为Athila、Tat、CRM、Reina和Tekay等5类。序列比对结果显示梨中逆转录酶具有较高的异质性,copia类逆转录酶序列分歧度为0.44,gypsy类为0.38。挑选出8类逆转录酶设计引物,并对梨属其它植物进行PCR扩增,结果显示这8类逆转录酶广泛存在于梨属植物中。在砂梨品种‘圆黄’的叶片、种子和果实中均发现该8类逆转录酶存在一定的转录水平,这是首次发现在梨属植物正常生长组织中逆转录酶发生转录。

关键词: 梨, Ty1-copia, Ty3-gypsy, 逆转录酶, 预测

Abstract: Different types of reverse transcriptase(RT)sequences in the whole genome of Pyrus pyrifolia white pear group‘Suli’were predicted by bioinformatics methods. A total of 345 RT sequences were obtained from copia group and 99 RT sequences were from gypsy group. The cluster analysis indicated that there were six lineages(Ivana,Ale,TAR,Angela,Maximus and Bianca)in copia group and five lineages in gypsy group(Athila,Tat,CRM,Reina and Tekay). Sequence alignment showed a high heterogeneity in both copia group and gypsy group,and the divergence of RT in both groups was 0.44 and 0.38,respectively. Eight types of RT were selected to design primers,each pair of primers showed clear amplified bands by PCR using genomic DNA of other Pyrus species. Eight types of RT were expressed with different levels in leaves,seeds and fruits of‘Wonhwang’pear,which was the first report on the expression of RT in the organs of pear trees under normal growing condition.

Key words: Pyrus, Ty1-copia, Ty3-gypsy, reverse transcriptase, prediction

中图分类号: