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园艺学报 ›› 2014, Vol. 41 ›› Issue (10): 2021-2034.

• 蔬菜 • 上一篇    下一篇

大白菜品种鉴定的SSR核心引物筛选及其应用

隋光磊,于拴仓,杨金雪,汪维红,苏同兵,张凤兰*,余阳俊,张德双,赵岫云   

  1. 北京市农林科学院蔬菜研究中心,农业部华北地区园艺作物生物学与种质创制重点实验室,北京100097
  • 收稿日期:2014-06-15 出版日期:2014-10-25 发布日期:2014-10-25
  • 基金资助:
    国家科技支撑计划项目(2012BAD50G01,2012BAD02B01);国家‘863’计划项目(2012AA020103,2012AA100101);国家‘973’项目(2012CB113906);国家现代农业产业技术体系建设专项资金项目(CARS-25-A-11)

Validation of a Core Set of Microsatellite Markers and Its Application for Varieties Identification in Chinese Cabbage

SUI Guang-lei,YU Shuan-cang,YANG Jin-xue,WANG Wei-hong,SU Tong-bing,ZHANG Feng-lan*,YU Yang-jun,ZHANG De-shuang,and ZHAO Xiu-yun   

  1. Beijing Vegetable Research Center,Beijing Academy of Agriculture and Forestry Sciences,Key Laboratory of Biology and Genetic Improvement of Horticultural Crops(North China),Ministry of Agriculture,Beijing 100097,China
  • Received:2014-06-15 Online:2014-10-25 Published:2014-10-25

摘要: 为筛选出一套大白菜(Brassica rapa L. ssp. pekinensis)简单重复序列(Simple sequence repeat,SSR)的核心引物,以54份大白菜骨干自交系为材料,从已发表的2 129对白菜SSR引物中,初步筛选出分布于白菜整个基因组、具有唯一扩增位点、扩增稳定性及重复性好的多态性SSR引物51对。进一步根据引物的多态性信息量(PIC)、等位基因数量、位点的物理位置和主成分分析(PCA)等分析结果,确定了一套包含28对SSR引物的核心引物组合。比较核心引物组合、51对多态性SSR引物和123个标记(72个SNP标记与51对多态性SSR引物)对54份大白菜骨干自交系的聚类分析结果,三者具有较高的一致性;该套引物可将262份大白菜高代自交系区分开,具有较好的鉴别能力。利用这套核心引物构建了242份大白菜品种的指纹图谱。该研究获得的28对SSR引物可以用于大白菜的遗传多样性分析和品种核酸指纹库构建等研究,可为大白菜新品种的特异性、一致性、稳定性检测体系的建立和新品种保护提供技术支持。

关键词: 大白菜, SSR, 核心引物, 品种鉴定

Abstract: To screen a core set of SSR primers for varieties identification in Chinese cabbage(Brassica rapa L. ssp. pekinensis),54 elite inbred lines were applied and 51 highly informative SSR markers that were equally distributed in the whole genome and had unique amplification loci,good stability and repeatability,were selected from the 2 129 mapped SSR as the candidate markers. According to results of Polymorphism Information Content(PIC),allele number,physical locations of loci and Principal Component Analysis(PCA)etc.,a core set of 28 SSR primers were further confirmed. Meanwhile,the dendrograms of 54 elite inbred lines based on 28 core primer combinations,51 candidateSSR primers and 123 markers(72 SNP and 51 polymorphic SSR primers)were highly consistent. Moreover,The utility of this core set SSRs was demonstrated in 262 inbred lines,which could be placed into three clusters that were largely consistent with previous classification. Finally,SSR fingerprint of 242 Chinese cabbage varieties were constructed using this core primer combinations. This core set of SSRmarkers should be very useful for genetic variation analysis and DNA fingerprinting of varieties,and would provide technical support for detecting of distinctness,uniformity and stability of new variety in Chinese cabbage.

Key words: Chinese cabbage, SSR, core primer, variety identification

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