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园艺学报 ›› 2014, Vol. 41 ›› Issue (8): 1535-1544.

• 果树 • 上一篇    下一篇

叶籽银杏DNA甲基化水平与模式变异的研究

李际红,邢世岩*,张 倩,姚培娟,王聪聪   

  1. (山东农业大学林学院,农业生态与环境重点实验室,山东泰安 271018)
  • 收稿日期:2014-03-17 出版日期:2014-08-25 发布日期:2014-08-25

The Changes in DNA Methylation Levels and Patterns of Ginkgo biloba var. epiphylla

LI Ji-hong,XING Shi-yan*,ZHANG Qian,YAO Pei-juan,and WANG Cong-cong   

  1. (Key Laboratory of Agricultural Ecology and Environment,College of Forestry,Shandong Agricultural University,Tai’an,Shandong 271018,China)
  • Received:2014-03-17 Online:2014-08-25 Published:2014-08-25

摘要: 以萌动期与展叶期的叶籽银杏和银杏为试材,采用基于DNA甲基化敏感扩增多态性分析(Methylation-sensitive amplification polymorphism,MSAP)方法,在全基因组水平上探究叶籽银杏、银杏不同发育期DNA序列中CCGG位点的甲基化水平及模式变化特征。萌动期选用22对引物,在叶籽银杏和银杏中检测到扩增位点为498和384个,甲基化位点为237和165个,其总甲基化率分别为47.6%和42.4%;展叶期选用40对引物,在叶籽银杏有叶生胚珠(YZ2)、无叶生胚珠(YC)及银杏(CK)叶片中检测到扩增位点767、600及367个,甲基化位点分别为370、244及152个,其总甲基化率分别为48.3%、40.5%及41.5%。进一步对不同发育期叶籽银杏、银杏DNA甲基化模式的变化特征进行分析,结果显示:萌动期、展叶期叶籽银杏与银杏相比均有超过半数的位点(52.1%、54.6%及64.2%)DNA甲基化模式发生多态性变化,萌动期叶籽银杏相对于银杏其变化趋势以超甲基化为主;展叶期叶籽银杏有叶生胚珠相对于叶籽银杏无叶生胚珠及银杏甲基化的变化趋势以超甲基化为主,叶籽银杏有叶生胚珠相对于银杏DNA甲基化模式变异幅度更大,超甲基化水平更高,显示出叶籽银杏基因组独特的DNA甲基化特征。

关键词: 叶籽银杏, DNA甲基化, 甲基化敏感扩增多态性分析, 甲基化模式

Abstract: Methylation-sensitive amplification polymorphism(MSAP)analysis was performed in Ginkgo biloba var. epiphylla Mak.(epiphylla ginkgo)and Ginkgo biloba(ginkgo),at both the bud-burst stage and the leaf-expansion stage,to characterize the DNA methylation levels and patterns of CCGG sites. The results showed that 22 selected primer sets totally amplified 498 and 384 loci,respectively in bursting buds of epiphylla ginkgo and ginkgo. And among them,237(47.6%)and 165(42.4%)loci were found methylated. While at the leaf-expansion stage,40 selected primer sets totally produced 767,600 and 367 loci,respectively in epiphyllous-ovule leaf of epiphylla ginkgo(YZ2),normal leaf of epiphylla ginkgo(YC)and ginkgo(CK). And among them,370(48.3%),244(40.5%)and 152(41.5%)loci were methylated. Further analysis revealed that more than half of the loci(52.1%,54.6%,64.2%)displayed changes in DNA methylation patterns in epiphylla ginkgo compared with ginkgo both at budding stages and leaf-expansion stages. Hypermethylation was found more frequent in both YZ1 and YZ2 than in CK,YC or CK. The greater variation of DNA methylation and more frequent hypermethylation occurred in epiphylla ginkgo suggested the unique DNA methylation profile of epiphylla ginkgo. These findings undoubtedly laid foundation for further discussing the origin and phylogeny of epiphylla ginkgo from the perspective of epigenetics.

Key words: Ginkgo biloba var. epiphylla, DNA methylation, methylation-sensitive amplification polymorphism(MSAP), methylation patterns

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