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园艺学报 ›› 2009, Vol. 36 ›› Issue (4): 493-500.

• 果树 • 上一篇    下一篇

利用基因组步行方法克隆柑橘黄龙病病原菌亚洲种序列

廖惠红1,2;李杨瑞1, 3*;彭宏祥2;白先进3;杨丽涛1;徐 宁2   

  1. (1广西大学农学院, 南宁530004; 2 广西农业科学院园艺研究所, 南宁530007; 3 广西作物遗传改良生物技术重点开放实验室, 南宁530007)
  • 收稿日期:2008-12-29 修回日期:1900-01-01 出版日期:2009-04-25 发布日期:2009-04-25
  • 通讯作者: 李杨瑞

Sequences Cloning of Candidatus Liberibactor asiaticus Associated withHuanglongbing Using Genomic Walking Method

LIAO Hui-hong1,2,LI Yang-rui1,3*, PENG Hong-xiang2,BA I Xian-jin3 , YANG Li-tao1,and XU Ning2   

  1. (1Agriculture College, Guangxi University, Nanning 530004, China; 2Horticulture Research Institute, Guangxi Academy of Agricultural Sciences, N anning 530007, China; 3Guangxi Crop Genetic Im provem ent and Biotechnology Lab, Nanning 530007,China)
  • Received:2008-12-29 Revised:1900-01-01 Online:2009-04-25 Published:2009-04-25
  • Contact: LI Yang-rui

摘要: 对NCBI基因库黄龙病亚洲种病原菌序列进行拼接, 并根据拼接结果在rplKAJL-rpoBC, 16S/23S rRNA和omp 3个位点上设计引物, 采用基因组步行方法, 在其亚洲种3个位点上共获得了15 168 bp非冗余新序列, 其中, 在rplKAJL2rpoBC位点上5′端上游区和3′端下游区分别获得了3 218和2 653 bp的非冗余新序列; 在16S/23S rRNA 位点上5′端上游区和3′端下游区分别延伸了1 853和2 459 bp的新序列; 在omp基因位点上分别获得了4 014和971 bp的新序列。序列分析表明在rplKAJL-rpoBC位点上的新序列包含2个新基因(suhB和serA) ; 16S/23S rRNA位点新序列包含4个新基因(膜转运蛋白基因、细胞壁脱氢酶
假基因、5S rRNA、tRNAMet ) , omp位点新序列包含6个新基因( rpsB、tsfpyrH、frrcdsA2、cds2) 。这些新序列的获得为以PCR为基础的黄龙病相关研究提供了有用的参考依据。

关键词: 柑橘, 黄龙病, Candidatus Liberibactor, 序列

Abstract: Huanglongbing (HLB) , previously known as greening disease, is probably the most serious disease in citrus. The presump tive causal agent is believed to be a non-cultured, phloem-restricted α-proteobacterium. Currently, there are three Candidatus L iberibactor spp. associated with citrus Huanglongbing
(HLB) disease, Ca. Liberibactor asiaticus, Ca. L iberibactor africanus and Ca. L iberibactor am ericanus. In this study, a genomic walkingmethod was used to obtain new sequences extended from previously known loci,rplKAJL-rpoBC, 16S/23S rRNA and outermembrane protein (omp) of Ca. Liberibactor asia ticus. In rplKA-JL 2rpoBC locus, 3 218 bp of new sequenceswere obtained at the 5′up stream end and 2 653 bp at the 3′downstream. Totally, fragments about 1 853 bp and 2 459 bp were also acquired from 5′up stream and 3′down
stream of 16S/23S rRNA region, respectively. Similarly, in om p locus, fragment about 4 014 bp were obtained at 5′up stream and 971 bp at 3′ downstream, respectively. Genomic walking app roach was used in this
study, and totally 15 168 bp non-redundancy sequences from asiaticus specieswere obtained. Sequence analy-sis shows that there are two new genes ( suhB and serA) at the rplKAJL-rpoBC gene cluster locus, four new
genes ( transmembrane p rotein gene, cell wall hydrolase p seudogene, 5S ribosomal RNA and tRNAMet ) extended from the 16S/23S rRNA gene locus and six new genes ( rpsB, tsf, pyrH, frr, cdsA2, cds2) at the omp
locus. These new sequences obtained in this study will facilitate the PCR-based HLB research.

Key words: citrus, Huanglongbing, Candidatus Liberibactor, sequence

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