园艺学报 ›› 2023, Vol. 50 ›› Issue (6): 1187-1202.doi: 10.16420/j.issn.0513-353x.2022-0297
阮若昕1, 骆慧枫1, 张琛1, 黄康康1, 郗笃隽1, 裴嘉博1, 邢梦云1,2, 刘辉1,*()
收稿日期:
2023-01-28
修回日期:
2023-05-12
出版日期:
2023-06-25
发布日期:
2023-06-27
通讯作者:
* (E-mail:liuhui518lh@163.com)基金资助:
RUAN Ruoxin1, LUO Huifeng1, ZHANG Chen1, HUANG Kangkang1, XI Dujun1, PEI Jiabo1, XING Mengyun1,2, LIU Hui1,*()
Received:
2023-01-28
Revised:
2023-05-12
Published:
2023-06-25
Online:
2023-06-27
摘要:
为探究中国南方暖湿地区甜樱桃适栽品种花芽休眠阶段的分子调控机制,以杭州地区种植的2个不同需冷量甜樱桃品种‘布鲁克斯’和‘萨米脱’为材料,分别于休眠前期(S1)、内休眠期(S2)和萌芽前期(S3)采集花芽,通过转录组测序比较2个品种间的基因表达差异。分析表明,S1、S2和S3时期分别获得343、671和1 588个差异表达基因,其中S3的差异基因数最多。GO分析表明,细胞组建、细胞代谢过程、刺激响应以及转运蛋白活性相关的基因在3个时期品种间均表现出显著差异。KEGG分析表明,S3富集的差异基因数及相关代谢途径最多,主要集中在糖代谢和蛋白质合成加工相关途径以及植物—病原互作、植物激素信号转导等途径,表达趋势分析显示部分差异基因可能参与调控甜樱桃花芽休眠状态的转换。通过转录因子预测分析,筛选到包含9个转录因子家族的42个差异表达转录因子,其中AP2/ERF、MYB、WRKY、C2H2、C3H和MADS-box家族的13个转录因子在S2的表达量显著高于S1和S3,表明这些转录因子可能参与了甜樱桃花芽休眠期的调控。
中图分类号:
阮若昕, 骆慧枫, 张琛, 黄康康, 郗笃隽, 裴嘉博, 邢梦云, 刘辉. 杭州地区不同需冷量甜樱桃品种休眠阶段花芽转录组分析[J]. 园艺学报, 2023, 50(6): 1187-1202.
RUAN Ruoxin, LUO Huifeng, ZHANG Chen, HUANG Kangkang, XI Dujun, PEI Jiabo, XING Mengyun, LIU Hui. Transcriptome Analysis of Flower Buds of Sweet Cherry Cultivars with Different Chilling Requirements During Dormancy Stages in Hangzhou[J]. Acta Horticulturae Sinica, 2023, 50(6): 1187-1202.
图2 ‘布鲁克斯’和‘萨米脱’甜樱桃各休眠阶段花芽差异表达基因数(A)及其维恩图(B) S1:休眠前期;S2:内休眠期;S3:萌芽前期。下同。
Fig. 2 Number(A)and Venn diagram(B)of DEGs in flower buds of sweet cherry‘Brooks’and‘Summit’at different dormancy stages S1:Pre-dormancy stage;S2:Endormancy stage;S3:Pre-budbreak stage. The same below.
图3 ‘布鲁克斯’和‘萨米脱’甜樱桃各休眠阶段花芽差异表达基因的主成分分析(PCA)
Fig. 3 Principal component analysis (PCA) of DEGs in flower buds of sweet cherry ‘Brooks’ and ‘Summit’ at different dormancy stages
图4 ‘布鲁克斯’和‘萨米脱’甜樱桃各休眠阶段花芽差异表达基因GO功能富集
Fig. 4 GO enrichment analysis of DEGs in flower buds of sweet cherrry‘Brooks’and‘Summit’at different dormancy stages
图5 ‘布鲁克斯’和‘萨米脱’甜樱桃之间各休眠阶段花芽差异表达基因KEGG代谢通路富集
Fig. 5 KEGG enrichment of DEGs in flower buds of sweet cherry ‘Brooks’ and ‘Summit’ at different dormancy stages
图6 ‘布鲁克斯’和‘萨米脱’甜樱桃之间各休眠阶段花芽中糖代谢相关途径差异表达基因的表达特性 热图中的值表示差异基因在‘萨米脱’中相对‘布鲁克斯’中同一时期的相对表达量(log2FC)。
Fig. 6 Expression profiles of DEGs involved in carbohydrate metabolism related pathways between flower buds of sweet cherry‘Brooks’and‘Summit’at different dormancy stages The values shown in the heatmap represent the average relative gene expression levels(log2FC)of DEGs in‘Summit’versus‘Brooks’at the same stage.
图7 ‘布鲁克斯’和‘萨米脱’甜樱桃之间不同休眠阶段花芽中胁迫响应相关途径差异表达基因表达特性 热图中的值表示差异基因在‘萨米脱’中相对‘布鲁克斯’中同一时期的相对表达量(log2FC)。
Fig. 7 Expression profiles of DEGs involved in stress response-related pathways between flower buds of sweet cherry‘Brooks’and‘Summit’at different dormancy stages The values shown in the heatmap represent the average relative gene expression levels(log2FC)of DEGs in‘Summit’versus‘Brooks’at the same stage.
图8 ‘布鲁克斯’和‘萨米脱’甜樱桃各休眠阶段花芽差异表达转录因子基因表达图谱
Fig. 8 Expression profile of DEGs encoded trancription factors in flower buds of sweet cherry‘Brooks’and‘Summit’at different dormancy stages
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