园艺学报 ›› 2023, Vol. 50 ›› Issue (2): 265-278.doi: 10.16420/j.issn.0513-353x.2021-1008
王瑞1,*, 洪文娟1,*, 罗华2, 赵丽娜2, 陈颖2, 王君1,**()
收稿日期:
2022-08-11
修回日期:
2022-12-02
出版日期:
2023-02-25
发布日期:
2023-03-06
通讯作者:
**(E-mail:作者简介:
第一联系人:*共同第一作者
基金资助:
WANG Rui1,*, HONG Wenjuan1,*, LUO Hua2, ZHAO Lina2, CHEN Ying2, WANG Jun1,**()
Received:
2022-08-11
Revised:
2022-12-02
Online:
2023-02-25
Published:
2023-03-06
Contact:
**(E-mail:摘要:
以枣庄市石榴国家林木种质资源库中收集的168个石榴品种为材料,利用SSR分子标记技术构建了石榴品种资源指纹图谱,并基于指纹图谱信息,应用最大似然值法(LOD)对品种‘秋艳’和‘会理青皮软籽’的自然授粉实生苗进行了杂种筛选及父本初步鉴定。22对SSR引物从168个石榴品种样品中共扩增到76个等位标记位点,其中多态性位点58个,多态性为76.3%。平均等位位点数(Na)、有效等位位点数(Ne)、观测杂合度(Ho)、期望杂合度(He)分别为3.455、2.269、0.362、0.538,Shannon’s信息指数(I)平均值为0.897,多态性信息含量(PIC)介于0.330 ~ 0.692之间,平均PIC值为0.462。利用22对SSR引物可将166个石榴品种区分开,另有‘大满天红甜’和‘小满天红甜’2个品种未有效区分,有同物异名的可能;在此基础上构建了166个品种的特异指纹代码及指纹图谱二维码。基于指纹图谱信息,利用SSR标记从‘秋艳’的30个自然授粉子代实生苗中筛选到1个真杂种Q-1,疑似父本为‘峄城丰产马牙’,LOD值为5.96;从‘会理青皮软籽’的118个自然授粉子代实生苗中筛选到6个真杂种H-4、H-49、H-51、H-87、H-94和H-103,疑似父本分别为‘四川黄皮酸’‘突尼斯软籽’‘蒙自红花白皮’‘四川黄皮酸’‘突尼斯软籽’及‘蒙自红花白皮’。
中图分类号:
王瑞, 洪文娟, 罗华, 赵丽娜, 陈颖, 王君. 石榴品种SSR指纹图谱构建及杂种父本鉴定[J]. 园艺学报, 2023, 50(2): 265-278.
WANG Rui, HONG Wenjuan, LUO Hua, ZHAO Lina, CHEN Ying, WANG Jun. Construction of SSR Fingerprints of Pomegranate Cultivars and Male Parent Identification of Hybrids[J]. Acta Horticulturae Sinica, 2023, 50(2): 265-278.
编号 No. | 位点名称 Locus name | 引物序列(5′-3′) Primer sequence | 等位变异配置 Allele configuration type | Na | Ne | I | PIC | Ho | He |
---|---|---|---|---|---|---|---|---|---|
A | PG_66_86 | F:GCTGGTAGGAGTGCTTGAGG R:TTCCCCTAATTTGGTGGGTT | 170/176,164/164,164/176,176/176, 164/170,170/170 | 3.000 | 2.319 | 0.927 | 0.482 | 0.310 | 0.569 |
B | PG_140_166 | F:AAAGCATGCGAAAGGATGAT R:CAATGCCAATGTTACGGATG | 299/299,299/303,299/307,303/303, 303/307,307/307 | 3.000 | 2.091 | 0.881 | 0.456 | 0.345 | 0.522 |
C | PG_105_152 | F:CGATGTGTACAGTTGTGGGC R:CCGTTTTAGCTCCAGTCTGC | 291/299,291/303,291/291,299/299, 303/303,299/303 | 3.000 | 2.573 | 1.003 | 0.529 | 0.387 | 0.611 |
D | PG_12_2170 | F:ATGAATCGACGCAGTATCCC R:AGACTGCATCGCCTACGAAT | 128/134,134/137,128/128,134/134, 137/137,128/137 | 3.000 | 2.974 | 1.094 | 0.590 | 0.565 | 0.664 |
E | PG_1_3684 | F:CTGTCGAAGGTCAGAGGCAT R:GCCACTGTTGATAGGGAGGA | 167/179,179/182,167/182,167/167, 179/179,182/182 | 3.000 | 2.478 | 0.975 | 0.511 | 0.425 | 0.596 |
F | PG_7_395 | F:TCGTTTTGAACGGTTTGACA R:CCTCAAATCAGGGCAGGATA | 216/219,219/222,216/222,216/216, 219/219,222/222 | 3.000 | 1.946 | 0.738 | 0.384 | 0.375 | 0.486 |
G | PG_4_973 | F:ACTCGGGTGTCACAGAAGGT R:GTGGTTTCGGCATAGCAGTT | 250/253,253/256,250/256,250/250, 253/259,256/259,259/259 | 4.000 | 1.787 | 0.844 | 0.406 | 0.393 | 0.441 |
H | PG_128_96 | F:GAGGAGTCAATTCGACCCAA R:CATCGAATTCTATTCCCTCCC | 209/214,209/224,214/219,214/224, 209/209,214/214,219/219,224/224 | 4.000 | 2.159 | 0.948 | 0.479 | 0.446 | 0.537 |
I | PG_16_243 | F:CGGACGGCCTTCAAATTTAT R:ATTGTGATGCCAATGTACCG | 180/189,189/192,180/192,180/180, 189/189,192/192 | 3.000 | 1.812 | 0.710 | 0.367 | 0.280 | 0.448 |
J | PG_1_1897 | F:TCTTGTTGGTCTGGTGGTGA R:TTTCTGGTTCCACAACCGAT | 216/219,216/216,219/219 | 2.000 | 1.819 | 0.643 | 0.349 | 0.351 | 0.450 |
K | PG_15_1988 | F:TCTGAATGTTTATCGGATTTCG R:CATTATCACGTTGCCCCTTT | 276/279,276/276,279/279 | 2.000 | 1.980 | 0.688 | 0.372 | 0.232 | 0.495 |
L | PG_5_1456 | F:GCGGAGTGAGCAATTTGTTT R:GTCCGTAGCCTCCGTACAAA | 207/210,207/207,210/210 | 2.000 | 1.809 | 0.639 | 0.347 | 0.349 | 0.447 |
编号 No. | 位点名称 Locus name | 引物序列(5′-3′) Primer sequence | 等位变异配置 Allele configuration type | Na | Ne | I | PIC | Ho | He |
M | PG_10_276 | F:ATCAAAACACGTAAAGCCCG R:GTGCGTTCCTCTGTCGAAAT | 134/149,134/134,149/149 | 2.000 | 1.969 | 0.685 | 0.371 | 0.327 | 0.492 |
N | PG_4_2051 | F:GGGTTGTTTGCTAGTTTGCC R:AATAAGAGGAGGAGGGAGCG | 144/163,144/166,144/172,163/166, 163/172,163/175,166/172,172/175, 144/144,163/163,166/166,172/172 | 5.000 | 3.833 | 1.398 | 0.692 | 0.512 | 0.739 |
O | PG_8_401 | F:TGCTCTTTGTCTTACTAGGCATGA R:CCCAATAAATGACTCGTCGG | 152/158,152/161,158/161,158/164, 161/164,152/152,158/158,161/161, 164/164 | 4.000 | 2.000 | 0.937 | 0.456 | 0.333 | 0.500 |
P | PG_2_1400 | F:ATTCGAACTTTTGTGGACGG R:GAAGGCTGTCGAGTTCTTGG | 166/172,172/175,166/166,172/172, 175/175,166/175 | 3.000 | 2.504 | 0.995 | 0.525 | 0.292 | 0.601 |
Q | PG_5_1603 | F:AAAGTTTGCAAAAGAGCCCA R:TGTCTTCTTCTGTTCAATTACCTCA | 200/215,200/218,200/221,200/227, 215/221,218/221,200/200,215/215, 221/221 | 5.000 | 2.298 | 1.038 | 0.509 | 0.375 | 0.565 |
R | PG_8_1472 | F:CACTCATGCAACTTTATTGAAAA R:CAATCCCGTGCATTACACAA | 174/186,174/189,183/186,183/189, 186/189,183/183,186/186,189/189 | 4.000 | 2.101 | 0.873 | 0.436 | 0.292 | 0.524 |
S | PG_12_893 | F:TCAACTCTAAAACCAAACGCAA R:CCAACGCTCCCATGTACTTT | 207/231,222/231,225/231,234/234, 228/231,207/207,231/231,231/234, 228/228 | 6.000 | 1.543 | 0.740 | 0.330 | 0.244 | 0.352 |
T | PG_16_779 | F:TGAAGAAGGCACACCAAGAG R:GTGTACGTGGAGCGGAAAAT | 114/117,117/120,114/120,114/114, 117/117,120/120, | 3.000 | 1.889 | 0.699 | 0.368 | 0.304 | 0.471 |
U | PG_8_563 | F:CCATGAGAGCTTCTTTTGGC R:TCCTTCCTCACCATCTGACC | 274/277,277/280,274/280,274/274, 277/277,280/280 | 3.000 | 2.985 | 1.096 | 0.591 | 0.310 | 0.665 |
V | PG_19_723 | F:TTGTGTTGTGATTTACCAAGATACTTC R:TCGAGAAATACTTTATCCAGCTCC | 149/152,149/161,152/161,152/167, 161/167,174/177,149/149,152/152, 161/161,167/167 | 6.000 | 3.051 | 1.175 | 0.603 | 0.524 | 0.672 |
平均Mean | 3.455 | 2.269 | 0.897 | 0.462 | 0.362 | 0.538 |
表1 石榴基因组22对SSR位点引物及多态性信息
Table 1 Polymorphic information of 22 pairs of SSR primer from pomegranate genome
编号 No. | 位点名称 Locus name | 引物序列(5′-3′) Primer sequence | 等位变异配置 Allele configuration type | Na | Ne | I | PIC | Ho | He |
---|---|---|---|---|---|---|---|---|---|
A | PG_66_86 | F:GCTGGTAGGAGTGCTTGAGG R:TTCCCCTAATTTGGTGGGTT | 170/176,164/164,164/176,176/176, 164/170,170/170 | 3.000 | 2.319 | 0.927 | 0.482 | 0.310 | 0.569 |
B | PG_140_166 | F:AAAGCATGCGAAAGGATGAT R:CAATGCCAATGTTACGGATG | 299/299,299/303,299/307,303/303, 303/307,307/307 | 3.000 | 2.091 | 0.881 | 0.456 | 0.345 | 0.522 |
C | PG_105_152 | F:CGATGTGTACAGTTGTGGGC R:CCGTTTTAGCTCCAGTCTGC | 291/299,291/303,291/291,299/299, 303/303,299/303 | 3.000 | 2.573 | 1.003 | 0.529 | 0.387 | 0.611 |
D | PG_12_2170 | F:ATGAATCGACGCAGTATCCC R:AGACTGCATCGCCTACGAAT | 128/134,134/137,128/128,134/134, 137/137,128/137 | 3.000 | 2.974 | 1.094 | 0.590 | 0.565 | 0.664 |
E | PG_1_3684 | F:CTGTCGAAGGTCAGAGGCAT R:GCCACTGTTGATAGGGAGGA | 167/179,179/182,167/182,167/167, 179/179,182/182 | 3.000 | 2.478 | 0.975 | 0.511 | 0.425 | 0.596 |
F | PG_7_395 | F:TCGTTTTGAACGGTTTGACA R:CCTCAAATCAGGGCAGGATA | 216/219,219/222,216/222,216/216, 219/219,222/222 | 3.000 | 1.946 | 0.738 | 0.384 | 0.375 | 0.486 |
G | PG_4_973 | F:ACTCGGGTGTCACAGAAGGT R:GTGGTTTCGGCATAGCAGTT | 250/253,253/256,250/256,250/250, 253/259,256/259,259/259 | 4.000 | 1.787 | 0.844 | 0.406 | 0.393 | 0.441 |
H | PG_128_96 | F:GAGGAGTCAATTCGACCCAA R:CATCGAATTCTATTCCCTCCC | 209/214,209/224,214/219,214/224, 209/209,214/214,219/219,224/224 | 4.000 | 2.159 | 0.948 | 0.479 | 0.446 | 0.537 |
I | PG_16_243 | F:CGGACGGCCTTCAAATTTAT R:ATTGTGATGCCAATGTACCG | 180/189,189/192,180/192,180/180, 189/189,192/192 | 3.000 | 1.812 | 0.710 | 0.367 | 0.280 | 0.448 |
J | PG_1_1897 | F:TCTTGTTGGTCTGGTGGTGA R:TTTCTGGTTCCACAACCGAT | 216/219,216/216,219/219 | 2.000 | 1.819 | 0.643 | 0.349 | 0.351 | 0.450 |
K | PG_15_1988 | F:TCTGAATGTTTATCGGATTTCG R:CATTATCACGTTGCCCCTTT | 276/279,276/276,279/279 | 2.000 | 1.980 | 0.688 | 0.372 | 0.232 | 0.495 |
L | PG_5_1456 | F:GCGGAGTGAGCAATTTGTTT R:GTCCGTAGCCTCCGTACAAA | 207/210,207/207,210/210 | 2.000 | 1.809 | 0.639 | 0.347 | 0.349 | 0.447 |
编号 No. | 位点名称 Locus name | 引物序列(5′-3′) Primer sequence | 等位变异配置 Allele configuration type | Na | Ne | I | PIC | Ho | He |
M | PG_10_276 | F:ATCAAAACACGTAAAGCCCG R:GTGCGTTCCTCTGTCGAAAT | 134/149,134/134,149/149 | 2.000 | 1.969 | 0.685 | 0.371 | 0.327 | 0.492 |
N | PG_4_2051 | F:GGGTTGTTTGCTAGTTTGCC R:AATAAGAGGAGGAGGGAGCG | 144/163,144/166,144/172,163/166, 163/172,163/175,166/172,172/175, 144/144,163/163,166/166,172/172 | 5.000 | 3.833 | 1.398 | 0.692 | 0.512 | 0.739 |
O | PG_8_401 | F:TGCTCTTTGTCTTACTAGGCATGA R:CCCAATAAATGACTCGTCGG | 152/158,152/161,158/161,158/164, 161/164,152/152,158/158,161/161, 164/164 | 4.000 | 2.000 | 0.937 | 0.456 | 0.333 | 0.500 |
P | PG_2_1400 | F:ATTCGAACTTTTGTGGACGG R:GAAGGCTGTCGAGTTCTTGG | 166/172,172/175,166/166,172/172, 175/175,166/175 | 3.000 | 2.504 | 0.995 | 0.525 | 0.292 | 0.601 |
Q | PG_5_1603 | F:AAAGTTTGCAAAAGAGCCCA R:TGTCTTCTTCTGTTCAATTACCTCA | 200/215,200/218,200/221,200/227, 215/221,218/221,200/200,215/215, 221/221 | 5.000 | 2.298 | 1.038 | 0.509 | 0.375 | 0.565 |
R | PG_8_1472 | F:CACTCATGCAACTTTATTGAAAA R:CAATCCCGTGCATTACACAA | 174/186,174/189,183/186,183/189, 186/189,183/183,186/186,189/189 | 4.000 | 2.101 | 0.873 | 0.436 | 0.292 | 0.524 |
S | PG_12_893 | F:TCAACTCTAAAACCAAACGCAA R:CCAACGCTCCCATGTACTTT | 207/231,222/231,225/231,234/234, 228/231,207/207,231/231,231/234, 228/228 | 6.000 | 1.543 | 0.740 | 0.330 | 0.244 | 0.352 |
T | PG_16_779 | F:TGAAGAAGGCACACCAAGAG R:GTGTACGTGGAGCGGAAAAT | 114/117,117/120,114/120,114/114, 117/117,120/120, | 3.000 | 1.889 | 0.699 | 0.368 | 0.304 | 0.471 |
U | PG_8_563 | F:CCATGAGAGCTTCTTTTGGC R:TCCTTCCTCACCATCTGACC | 274/277,277/280,274/280,274/274, 277/277,280/280 | 3.000 | 2.985 | 1.096 | 0.591 | 0.310 | 0.665 |
V | PG_19_723 | F:TTGTGTTGTGATTTACCAAGATACTTC R:TCGAGAAATACTTTATCCAGCTCC | 149/152,149/161,152/161,152/167, 161/167,174/177,149/149,152/152, 161/161,167/167 | 6.000 | 3.051 | 1.175 | 0.603 | 0.524 | 0.672 |
平均Mean | 3.455 | 2.269 | 0.897 | 0.462 | 0.362 | 0.538 |
编号 No. | 品种 Cultivar | SSR指纹代码 SSR fingerprint code | 指纹图谱二维码 Fingerprint QR code |
---|---|---|---|
1 | 满天红酸 Mantianhongsuan | A-170,176/B-303,303/C-291,303/D-128,137/E-179,179/F-219,219/G-256,256/H-224,224/I-189,189/J-216,216/K-279,279/L-210,210/M-134,134/N-172,172/O-161,161/P-172,172/Q-200,200/R-186,186/S-228,228/T-114,114/U-280,280/V-149,152 | |
2 | 大叶满天红 Daye Mantianhong | A-170,176/B-299,299/C-299,299/D-128,128/E-167,179/F-216,219/G-250,256/H-224,224/I-189,189/J-216,216/K-276,279/L-210,210/M-134,134/N-163,172/O-158,161/P-175,175/Q-200,200/R-186,186/S-231,231/T-114,114/U-277,280/V-152,152 | |
3 | 太行红 Taihanghong | A-164,164/B-299,299/C-303,303/D-128,128/E-179,179/F-216,216/G-259,259/H-224,224/I-192,192/J-216,216/K-276,276/L-210,210/M-134,134/N-163,163/O-158,158/P-175,175/Q-221,221/R-186,189/S-231,231/T-120,120/U-277,277/V-161,161 | |
9 | 新疆红皮 Xinjiang Hongpi | A-164,164/B-299,303/C-291,299/D-134,137/E-167,167/F-219,219/G-250,256/H-214,214/I-180,180/J-216,219/K-279,279/L-210,210/M-134,134/N-163,172/O-152,158/P-166,172/Q-200,227/R-189,189/S-231,231/T-114,117/U-274,274/V-152,152 | |
11 | 临潼红皮甜 Lintong Hongpitian | A-164,176/B-299,299/C-291,291/D-128,134/E-179,179/F-216,219/G-256,256/H-214,214/I-180,180/J-219,219/K-276,276/L-207,210/M-149,149/N-166,166/O-164,164/P-175,175/Q-215,221/R-186,186/S-231,231/T-114,114/U-274,280/V-149,161 | |
12 | 临选2号 Linxuan 2 | A-164,176/B-299,299/C-303,303/D-134,134/E-179,179/F-216,216/G-256,256/H-214,214/I-180,180/J-219,219/K-276,276/L-207,210/M-149,149/N-166,166/O-158,158/P-175,175/Q-215,221/R-186,186/S-231,231/T-114,114/U-274,274/V-149,149 | |
编号 No. | 品种 Cultivar | SSR指纹代码 SSR fingerprint code | 指纹图谱二维码 Fingerprint QR code |
15 | 董家外石榴 Dongjiawai Shiliu | A-176,176/B-299,299/C-299,299/D-128,137/E-179,179/F-216,216/G-256,256/H-209,214/I-180,180/-J216,216/K-279,279/L-207,207/M-134,134/N-163,166/O-158,158/P-172,175/Q-221,221/R-189,189/S-231,231/T-114,114/U-274,274/V-161,161 | |
16 | 御石榴 Yushiliu | A-176,176/B-299,299/C-299,303/D-128,137/E-179,179/F-216,216/G-256,256/H-209,214/I-180,180/J-216,216/K-279,279/L-207,207/M-134,134/N-163,166/O-158,158/P-172,175/Q-221,221/R-189,189/S-231,231/T-114,114/U-274,274/V-161,161 |
表2 8个石榴品种的SSR指纹代码及指纹图谱
Table 2 SSR fingerprint codes and fingerprints of eight pomegranate cultivars
编号 No. | 品种 Cultivar | SSR指纹代码 SSR fingerprint code | 指纹图谱二维码 Fingerprint QR code |
---|---|---|---|
1 | 满天红酸 Mantianhongsuan | A-170,176/B-303,303/C-291,303/D-128,137/E-179,179/F-219,219/G-256,256/H-224,224/I-189,189/J-216,216/K-279,279/L-210,210/M-134,134/N-172,172/O-161,161/P-172,172/Q-200,200/R-186,186/S-228,228/T-114,114/U-280,280/V-149,152 | |
2 | 大叶满天红 Daye Mantianhong | A-170,176/B-299,299/C-299,299/D-128,128/E-167,179/F-216,219/G-250,256/H-224,224/I-189,189/J-216,216/K-276,279/L-210,210/M-134,134/N-163,172/O-158,161/P-175,175/Q-200,200/R-186,186/S-231,231/T-114,114/U-277,280/V-152,152 | |
3 | 太行红 Taihanghong | A-164,164/B-299,299/C-303,303/D-128,128/E-179,179/F-216,216/G-259,259/H-224,224/I-192,192/J-216,216/K-276,276/L-210,210/M-134,134/N-163,163/O-158,158/P-175,175/Q-221,221/R-186,189/S-231,231/T-120,120/U-277,277/V-161,161 | |
9 | 新疆红皮 Xinjiang Hongpi | A-164,164/B-299,303/C-291,299/D-134,137/E-167,167/F-219,219/G-250,256/H-214,214/I-180,180/J-216,219/K-279,279/L-210,210/M-134,134/N-163,172/O-152,158/P-166,172/Q-200,227/R-189,189/S-231,231/T-114,117/U-274,274/V-152,152 | |
11 | 临潼红皮甜 Lintong Hongpitian | A-164,176/B-299,299/C-291,291/D-128,134/E-179,179/F-216,219/G-256,256/H-214,214/I-180,180/J-219,219/K-276,276/L-207,210/M-149,149/N-166,166/O-164,164/P-175,175/Q-215,221/R-186,186/S-231,231/T-114,114/U-274,280/V-149,161 | |
12 | 临选2号 Linxuan 2 | A-164,176/B-299,299/C-303,303/D-134,134/E-179,179/F-216,216/G-256,256/H-214,214/I-180,180/J-219,219/K-276,276/L-207,210/M-149,149/N-166,166/O-158,158/P-175,175/Q-215,221/R-186,186/S-231,231/T-114,114/U-274,274/V-149,149 | |
编号 No. | 品种 Cultivar | SSR指纹代码 SSR fingerprint code | 指纹图谱二维码 Fingerprint QR code |
15 | 董家外石榴 Dongjiawai Shiliu | A-176,176/B-299,299/C-299,299/D-128,137/E-179,179/F-216,216/G-256,256/H-209,214/I-180,180/-J216,216/K-279,279/L-207,207/M-134,134/N-163,166/O-158,158/P-172,175/Q-221,221/R-189,189/S-231,231/T-114,114/U-274,274/V-161,161 | |
16 | 御石榴 Yushiliu | A-176,176/B-299,299/C-299,303/D-128,137/E-179,179/F-216,216/G-256,256/H-209,214/I-180,180/J-216,216/K-279,279/L-207,207/M-134,134/N-163,166/O-158,158/P-172,175/Q-221,221/R-189,189/S-231,231/T-114,114/U-274,274/V-161,161 |
位点名称 Locus name | 多态信息含量 PIC | 非父排除率/% Excluding probability of paternity | |
---|---|---|---|
NE-1P | NE-2P | ||
PG_4_2051 | 0.692 | 68.20 | 50.87 |
PG_19_723 | 0.603 | 76.87 | 61.58 |
PG_8_563 | 0.591 | 78.15 | 63.44 |
PG_12_2170 | 0.590 | 78.25 | 63.54 |
PG_105_152 | 0.529 | 81.52 | 68.49 |
PG_2_1400 | 0.525 | 81.14 | 67.22 |
PG_1_3684 | 0.524 | 81.60 | 68.60 |
PG_5_1603 | 0.515 | 83.82 | 68.89 |
PG_8_401 | 0.480 | 85.83 | 70.95 |
PG_66_86 | 0.473 | 84.42 | 72.78 |
PG_128_96 | 0.466 | 85.81 | 71.74 |
PG_140_166 | 0.456 | 85.97 | 72.90 |
PG_8_1472 | 0.442 | 85.24 | 73.95 |
PG_4_973 | 0.415 | 89.62 | 75.19 |
PG_7_395 | 0.388 | 87.82 | 79.40 |
PG_15_1988 | 0.377 | 87.91 | 81.54 |
PG_10_276 | 0.373 | 88.10 | 81.67 |
PG_16_779 | 0.369 | 89.08 | 81.22 |
PG_16_243 | 0.367 | 90.31 | 81.32 |
PG_1_1897 | 0.349 | 89.49 | 82.30 |
PG_5_1456 | 0.347 | 89.94 | 82.65 |
PG_12_893 | 0.330 | 93.94 | 81.28 |
平均值Mean | 0.462 | 84.68 | 72.80 |
累积排除率/% Cumulative probability of exclusion | 97.67 | 99.92 |
表3 22对SSR引物的非父排除率
Table 3 The excluding probability of paternity of 22 SSR primer pairs
位点名称 Locus name | 多态信息含量 PIC | 非父排除率/% Excluding probability of paternity | |
---|---|---|---|
NE-1P | NE-2P | ||
PG_4_2051 | 0.692 | 68.20 | 50.87 |
PG_19_723 | 0.603 | 76.87 | 61.58 |
PG_8_563 | 0.591 | 78.15 | 63.44 |
PG_12_2170 | 0.590 | 78.25 | 63.54 |
PG_105_152 | 0.529 | 81.52 | 68.49 |
PG_2_1400 | 0.525 | 81.14 | 67.22 |
PG_1_3684 | 0.524 | 81.60 | 68.60 |
PG_5_1603 | 0.515 | 83.82 | 68.89 |
PG_8_401 | 0.480 | 85.83 | 70.95 |
PG_66_86 | 0.473 | 84.42 | 72.78 |
PG_128_96 | 0.466 | 85.81 | 71.74 |
PG_140_166 | 0.456 | 85.97 | 72.90 |
PG_8_1472 | 0.442 | 85.24 | 73.95 |
PG_4_973 | 0.415 | 89.62 | 75.19 |
PG_7_395 | 0.388 | 87.82 | 79.40 |
PG_15_1988 | 0.377 | 87.91 | 81.54 |
PG_10_276 | 0.373 | 88.10 | 81.67 |
PG_16_779 | 0.369 | 89.08 | 81.22 |
PG_16_243 | 0.367 | 90.31 | 81.32 |
PG_1_1897 | 0.349 | 89.49 | 82.30 |
PG_5_1456 | 0.347 | 89.94 | 82.65 |
PG_12_893 | 0.330 | 93.94 | 81.28 |
平均值Mean | 0.462 | 84.68 | 72.80 |
累积排除率/% Cumulative probability of exclusion | 97.67 | 99.92 |
母本 Female parent | 子代 Offspring | 最大似然值 LOD score | 疑似父本 Suspected male parent |
---|---|---|---|
秋艳Qiuyan | Q-1 | 5.96 | 峄城丰产马牙Yicheng Fengchan Maya |
会理青皮软籽Huili Qingpi Ruanzi | H-4 | 1.30 | 四川黄皮酸Sichuan Huangpisuan |
H-49 | 8.43 | 突尼斯软籽Tunisian Ruanzi | |
H-51 | 7.53 | 蒙自红花白皮Mengzi Huanghua Baipi | |
H-87 | 1.38 | 四川黄皮酸Sichuan Huangpisuan | |
H-94 | 9.92 | 突尼斯软籽Tunisian Ruanzi | |
H-103 | 1.06 | 红皮软籽Hongpi Ruanzi |
表4 父本分析结果
Table 4 Male parent analysis results
母本 Female parent | 子代 Offspring | 最大似然值 LOD score | 疑似父本 Suspected male parent |
---|---|---|---|
秋艳Qiuyan | Q-1 | 5.96 | 峄城丰产马牙Yicheng Fengchan Maya |
会理青皮软籽Huili Qingpi Ruanzi | H-4 | 1.30 | 四川黄皮酸Sichuan Huangpisuan |
H-49 | 8.43 | 突尼斯软籽Tunisian Ruanzi | |
H-51 | 7.53 | 蒙自红花白皮Mengzi Huanghua Baipi | |
H-87 | 1.38 | 四川黄皮酸Sichuan Huangpisuan | |
H-94 | 9.92 | 突尼斯软籽Tunisian Ruanzi | |
H-103 | 1.06 | 红皮软籽Hongpi Ruanzi |
[1] | Chen Li-na, Jing Dan, Tang Li-Yin, Cao Shang-yin. 2019. Fruit scientific research in New China in the past 70 years:pomegranate. Journal of Fruit Science, 36 (10):1389-1398. (in Chinese) |
陈利娜, 敬丹, 唐丽颖, 曹尚银. 2019. 新中国果树科学研究70年——石榴. 果树学报, 36 (10):1389-1398. | |
[2] | Chen Meng-jie, Lü Chang-ping, Yang Zheng-min, Shi Yang, Shuai Jia-qi. 2021. Authenticity identification of hybrid progenies of Paeonia suffruticosa based on SSR markers. Molecular Plant Breeding, https://kns.cnki.net/kcms/detail/46.1068.S.20210406.1628.012.html. (in Chinese) |
陈梦洁, 吕长平, 秧拯民, 石杨, 帅佳琪. 2021. 基于SSR标记的牡丹杂交子代真实性鉴定. 分子植物育种, https://kns.cnki.net/kcms/detail/46.1068.S.20210406.1628.012.html. | |
[3] | Derin K, Eti S. 2001. Determination of pollen quality,quantity and effect of cross pollination on the fruit set and quality in the pomegranate. Turkish Journal of Agriculture and Forestry, 25 (3):169-173. |
[4] |
Grattapaglia D, Ribeiro V J, Rezende G D S P. 2004. Retrospective selection of elite parent trees using paternity testing with microsatellite markers:an alternative short term breeding tactic for Eucalyptus. Theoretical Applied Genetics, 109 (1):192-199.
doi: 10.1007/s00122-004-1617-9 URL |
[5] |
Han Z, Gao P, Geng X, Du K, Kang X. 2017. Identification of the male parent of superior half-sib Populus tomentosa individuals based on SSR markers. Molecular Breeding, 37 (12):155.
doi: 10.1007/s11032-017-0754-1 URL |
[6] | Han Zhi-qiang, Ren Yong-yu, Xia Yu-fei, Geng Xi-ning, Du Kang, Kang Xiang-yang. 2019. Construction of polymorphic SSR primer library and germplasm resource fingerprint database of Populus tomentosa. Journal of Beijing Forestry University, 41 (7):10-18. (in Chinese) |
韩志强, 任勇谕, 夏宇飞, 耿喜宁, 杜康, 康向阳. 2019. 毛白杨多态SSR引物库和种质资源指纹图谱库构建. 北京林业大学学报, 41 (7):10-18. | |
[7] | He Tian-hua, Ge Song. 2001. Mating system,paternity analysis and gene flow in plant populations. Acta Phytoecologica Sinica, 25 (1):166-174. (in Chinese) |
何田华, 葛颂. 2001. 植物居群交配系统、亲本分析与基因流动研究. 植物生态学报, 25 (1):166-174. | |
[8] | Hong Wen-juan, Hao Zhao-xiang, Liu Kang-jia, Luo Hua, Bi Run-xia, Yuan Zhao-he, Zong Shi-xiang, Wang Jun. 2019. Development and identification of SSR molecular markers based on whole genomic sequences of Punica granatum. Journal of Beijing Forestry University, 41 (8):38-47. (in Chinese) |
洪文娟, 郝兆祥, 刘康佳, 罗华, 毕润霞, 苑兆和, 宗世祥, 王君. 2019. 基于石榴全基因组序列的SSR标记开发及鉴定. 北京林业大学学报, 41 (8):38-47. | |
[9] | Huang Dan-juan, Ma Jian-qiang, Chen Liang. 2015. Research progress of tea tree DNA molecular fingerprinting. Journal of Tea Science, 35 (6):513-519. (in Chinese) |
黄丹娟, 马建强, 陈亮. 2015. 茶树DNA分子指纹图谱研究进展. 茶叶科学, 35 (6):513-519. | |
[10] | Jin Ling, Liu Ming-guo, Dong Sheng-jun, Wu Yue-liang, Zhang Xin. 2018. Genetic diversity and fingerprints of 97 Armeniaca sibirica clones based on SSR markers. Scientia Silvae Sinicae, 54 (7):51-61. (in Chinese) |
金玲, 刘明国, 董胜君, 吴月亮, 张欣. 2018. 97个山杏无性系的遗传多样性及SSR指纹图谱. 林业科学, 54 (7):51-61. | |
[11] | Khalil B M, Awd N A, Rayan A O, Eihamady M A. 2014. Selection and evaluation of genetic diversity in pomegranate:I-Some criteria for studying the progenies of selfing,open-pollination and hybrid between Nab-EI Gamal and EI-Tahrir cultivars. Bulletin of Faculty of Agriculture,Cairo University, 65 (3):303-317. |
[12] | Kong Xiang-bin, Zhang Chun-qing, Xu Zi-feng. 2005. Application of DNA fingerprinting technology in crop variety(line)identification and purity analysis. Biotechnology, 15 (4):74-77. (in Chinese) |
孔祥彬, 张春庆, 许子锋. 2005. DNA指纹图谱技术在作物品种(系)鉴定与纯度分析中的应用. 生物技术, 15 (4):74-77. | |
[13] |
Laosatit K, Amkul K, Chankaew S, Somta P. 2022. Molecular genetic diversity of winged bean gene pool in Thailand assessed by SSR markers. Horticultural Plant Journal, 8 (1):81-88.
doi: 10.1016/j.hpj.2021.05.001 URL |
[14] |
Li Chao, Yang Ying, Chen Wei, Zheng Heyun, Liao Xinfu, Sun Yuping. 2022. Construction of DNA fingerprinting and clustering analysis with SSR markers for the muskmelon of Xizhoumi series. Acta Horticulturae Sinica, 49 (3):622-632. (in Chinese)
doi: 10.16420/j.issn.0513-353x.2021-0267 |
李超, 杨英, 陈伟, 郑贺云, 廖新福, 孙玉萍. 2022. 西州密系列甜瓜SSR指纹图谱构建及聚类分析. 园艺学报, 49 (3):622-632.
doi: 10.16420/j.issn.0513-353x.2021-0267 |
|
[15] |
Li Haoxian, Cao Shangyin, Yao Fang, Luo Xiang, Xin Changyong, Zhao Diguang, Zhang Shuying, Xia Xiaocong, Liu Jun, Chen Lina, Yao Hailei, Jing Dan. 2019. A new soft-seed pomegranate cultivar‘Zhongshiliu 8’. Acta Horticulturae Sinica, 46 (S2):2771-2772. (in Chinese)
doi: 10.16420/j.issn.0513-353x.2019-0553 |
李好先, 曹尚银, 姚方, 骆翔, 辛长永, 赵弟广, 张淑英, 夏小丛, 刘军, 陈利娜, 姚海雷, 敬丹. 2019. 超软籽石榴新品种‘中石榴8号’. 园艺学报, 46 (S2):2771-2772.
doi: 10.16420/j.issn.0513-353x.2019-0553 |
|
[16] | Luo X, Cao S Y, Hao Z X, Hou L F, Cao D, Zhang J, Li H X, Niu J, Xue H, Chen L N. 2018. Analysis of genetic structure in a large sample of pomegranate(Punica granatum L.)using fluorescent SSR markers. The Journal of Horticultural Science & Biotechnology, 93 (6):659-665. |
[17] | Ma Li, Zhou Yu-liang, Hao Zhao-xiang, Ding Cheng-shi, Hou Le-feng, Kang Mei-ling, Luo Hua. 2020. Sequence analysis on matK gene from pomegranate(Punica granatum)germplasm resources. Molecular Plant Breeding, 18 (16):5274-5279. (in Chinese) |
马丽, 周玉亮, 郝兆祥, 丁城实, 侯乐峰, 康美玲, 罗华. 2020. 石榴种质资源的matK基因序列分析. 分子植物育种, 18 (16):5274-5279. | |
[18] | Mao Xiu-hong, Zheng Yong-qi, Sun Bai-you, Zhang Yuan-shuai, Han Cong-cong, Wei Xiao, Xun Shou-hua. 2017. Genetic diversity and fingerprints of Robinia pseudoacacia clones based on SSR markers. Scientia Silvae Sinicae, 53 (10):80-89. (in Chinese) |
毛秀红, 郑勇奇, 孙百友, 张元帅, 韩丛聪, 位晓, 荀守华. 2017. 基于SSR的刺槐无性系遗传多样性分析和指纹图谱构建. 林业科学, 53 (10):80-89. | |
[19] |
Marshall T C. 1998. Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology, 7 (5):639-655.
doi: 10.1046/j.1365-294x.1998.00374.x pmid: 9633105 |
[20] |
Meagher T R. 1986. Analysis of paternity within a natural population of Chamaelirium luteum. 1. Identification of most-likely male parents. The American Naturalist, 128 (2):199-215.
doi: 10.1086/284554 URL |
[21] |
Nie Xinghua, Li Yiran, Tian Shoule, Wang Xuefeng, Su Shuchai, Cao Qingqin, Xing Yu, Qin Ling. 2022. Construction of DNA fingerprint map and analysis of genetic diversity for Chinese chestnut cultivars(lines). Acta Horticulturae Sinica, 49 (11):2313-2324.
doi: 10.16420/j.issn.0513-353x.2021-0863 |
聂兴华, 李伊然, 田寿乐, 王雪峰, 苏淑钗, 曹庆芹, 邢宇, 秦岭. 2022. 中国板栗品种(系)DNA指纹图谱构建及其遗传多样性分析. 园艺学报, 49 (11):2313-2324.
doi: 10.16420/j.issn.0513-353x.2021-0863 |
|
[22] |
Rao V R, Hodgkin T. 2002. Genetic diversity and conservation and utilization of plant genetic resources. Plant Cell,Tissue and Organ Culture, 68 (1):1-19.
doi: 10.1023/A:1013359015812 URL |
[23] |
Reiz C, Breto M P, Asins M J. 2000. A quick methodology to identify sexual seedlings in citrus breeding programs using SSR marker. Euphytica, 112 (1):89-94.
doi: 10.1023/A:1003992719598 URL |
[24] | Shao Wen-hao, Wang Zhao-shan, Zhang Jian-guo, 2020. Paternity analysis of main olive cultivars progenies based on SSR markers. Forest Research, 33 (3):25-33. (in Chinese) |
邵文豪, 王兆山, 张建国. 2020. 基于SSR标记的油橄榄主要栽培品种子代父本分析. 林业科学研究, 33 (3):25-33. | |
[25] | Wang Jian-zhong, Lan Jun, Lu Zhen-xian, Yang Jun, Lü Li-hua, Pan Zhi-xin, Fei Xiao-yun. 2019. Study on using SSR markers for paternal identification in Eucalyptus. Eucalypt Science & Technology, 36 (2):1-8. (in Chinese) |
王建忠, 兰俊, 陆珍先, 杨珺, 吕华丽, 潘志新, 费晓云. 2019. 基于SSR分子标记的桉树父本鉴定技术研究. 桉树科技, 36 (2):1-8. | |
[26] | Wei Zhen-wu. 2004. Construction of alfalfa genomic DNA fingerprinting using SSR,ISSR and RAPD techniques. Acta Prataculturae Sinica, 13 (3):62-67. (in Chinese) |
魏臻武. 2004. 利用SSR、ISSR和RAPD技术构建苜蓿基因组DNA指纹图谱. 草业学报, 13 (3):62-67. | |
[27] |
Xu Yi-liu, Zhang Jin-yun, Liu Chang-hua, Gao Zheng-hui, Qin Gai-hua, Zhang Li-quan, Lou Zhi, Yi Xing-kai, Qi Yong-jie, Pan Hai-fa, Zhang Xiao-ling, Shu Bing, Li Yan-lin. 2015. A new pomegranate cultivar‘Manao Ruanzi’. Acta Horticulturae Sinica, 42 (S2):2863-2864. (in Chinese)
doi: 10.16420/j.issn.0513-353x.2015-0835 |
徐义流, 张金云, 刘长华, 高正辉, 秦改花, 张立全, 娄志, 伊兴凯, 齐永杰, 潘海发, 张晓玲, 束冰, 李艳玲. 2015. 石榴新品种‘玛瑙软籽’. 园艺学报, 42 (S2):2863-2864.
doi: 10.16420/j.issn.0513-353x.2015-0835 |
|
[28] | Yan Chun-xiao, Li An-qi, Li Yu, Ding Guo-chang. 2021. Paternal identification of excellent individual tree in the progeny of half siblings using SSR in Acacia melanoxylon. Molecular Plant Breeding, https://kns.cnki.net/kcms/detail/46.1068.S.20210518.0937.002.html. (in Chinese) |
严春晓, 李安琪, 李煜, 丁国昌. 2021. 利用SSR进行黑木相思半同胞子代优良单株的父本鉴定. 分子植物育种, https://kns.cnki.net/kcms/detail/46.1068.S.20210518.0937.002.html. | |
[29] |
Yazici K, Şahin A. 2016. Characterization of pomegranate(Punica granatum L.)hybrids and their potential use in further breeding. Turkish Journal of Agriculture and Forestry, 40 (6):813-824.
doi: 10.3906/tar-1604-120 URL |
[30] | Yuan Zhao-he, Yin Yan-lei, Zhu Li-qin, Li Yun, Hou Le-feng. 2008. Genetic diversity and relationship in pomegranate(Punica granatum L.) cultivars in Shandong revealed by fluorescent-AFLP markers. Acta Horticulturae Sinica, 35 (1):107-112. (in Chinese) |
苑兆和, 尹燕雷, 朱丽琴, 李云, 侯乐峰. 2008. 山东石榴品种遗传多样性与亲缘关系的荧光AFLP分析. 园艺学报, 35 (1):107-112. | |
[31] |
Zhang J, Yang J J, Fu S Z, Ren J, Zhang X F, Xia C X, Zhao H, Yang K, Wen C L. 2022. Comparison of DUS testing and SNP fingerprinting for variety identification in cucumber. Horticultural Plant Journal, 8 (5):575-582.
doi: 10.1016/j.hpj.2022.07.002 URL |
[32] | Zhang Si-pu, Wang Liang-ju, Cao Shang-yin, Liu Tao. 2008. Analysis of genetic diversity of 23 pomegranate genotypes by SRAP. Journal of Fruit Science, 25 (5):655-660. (in Chinese) |
张四普, 汪良驹, 曹尚银, 刘涛. 2008. 23个石榴基因型遗传多样性的SRAP分析. 果树学报, 25 (5):655-660. | |
[33] | Zhao Deng-chao, Sun Lei, Hao Zhao-xiang, Tang Gui-min, Han Chuan-ming, Wang Yan-qin, Jia Ming. 2017. A new large aril pomegranate cultivar ‘Jingliu’. Acta Horticulturae Sinica, 44 (8):1621-1622. (in Chinese) |
赵登超, 孙蕾, 郝兆祥, 唐贵敏, 韩传明, 王艳芹, 贾明. 2017. 大籽粒石榴新品种‘晶榴’. 园艺学报, 44 (8):1621-1622.
doi: 10.16420/j.issn.0513-353x.2016-0925 |
|
[34] | Zhu Zhen-dong, Wang Hua-bo, Wang Xiao-min, Wu Xiao-fei. 2004. Response of soybean cultivars or lines developed in Heilongjiang Province to five strains of Phytophthora sojae. Journal of Plant Genetic Resources, 5 (1):22-25. (in Chinese) |
朱振东, 王化波, 王晓鸣, 武小菲. 2004. 黑龙江主要栽培大豆品种(系)对大豆疫霉根腐病的多抗性评价. 植物遗传资源学报, 5 (1):22-25. |
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