园艺学报 ›› 2022, Vol. 49 ›› Issue (3): 597-612.doi: 10.16420/j.issn.0513-353x.2020-0942
刘梦雨, 蒋梦琦, 陈燕, 张舒婷, 薛晓东, 肖学宸, 赖钟雄, 林玉玲*()
收稿日期:
2021-05-31
修回日期:
2021-09-09
出版日期:
2022-03-25
发布日期:
2022-03-25
通讯作者:
林玉玲
E-mail:buliang84@163.com
基金资助:
LIU Mengyu, JIANG Mengqi, CHEN Yan, ZHANG Shuting, XUE Xiaodong, XIAO Xuechen, LAI Zhongxiong, LIN Yuling*()
Received:
2021-05-31
Revised:
2021-09-09
Online:
2022-03-25
Published:
2022-03-25
Contact:
LIN Yuling
E-mail:buliang84@163.com
摘要:
基于第三代龙眼基因组数据库及其转录组数据库,通过生物信息学分析对龙眼GDSL酯酶/脂肪酶家族进行全基因组鉴定。结果显示龙眼GDSL(DlGDSL)家族共有118个成员,分为15个亚家族,亚细胞定位显示主要分布于细胞外基质中。染色体位置及共线性基因分析表明,118个DlGDSL基因中有111个定位在15条龙眼染色体上,包括13对共线性基因。基因结构和蛋白质保守基序分析表明该家族的外显子在2 ~ 12之间,且motif2和motif3是DlGDSL家族中尤为重要的保守基序。启动子顺式作用元件分析表明,启动子序列中包含众多光响应、激素应答、无氧诱导、胁迫响应和昼夜节律等响应元件,且大部分成员都含有茉莉酸甲酯(MeJA)、脱落酸(ABA)、生长素(IAA)和赤霉素(GA)等激素应答作用元件。FPKM值分析发现从胚性愈伤组织到球形胚阶段有26个差异表达的基因,提示DlGDSL家族部分成员可能在龙眼体胚形态建成中发挥重要作用。qRT-PCR分析表明,在外源ABA和MeJA处理下龙眼胚性愈伤组织中,DlGDSL家族部分成员可能与ABA、MeJA等激素信号转导相关。
中图分类号:
刘梦雨, 蒋梦琦, 陈燕, 张舒婷, 薛晓东, 肖学宸, 赖钟雄, 林玉玲. 龙眼GDSL酯酶/脂肪酶基因的全基因组鉴定及表达分析[J]. 园艺学报, 2022, 49(3): 597-612.
LIU Mengyu, JIANG Mengqi, CHEN Yan, ZHANG Shuting, XUE Xiaodong, XIAO Xuechen, LAI Zhongxiong, LIN Yuling. Genome-wide Identification and Expression Analysis of GDSL Esterase/Lipase Genes in Dimocarpus longan[J]. Acta Horticulturae Sinica, 2022, 49(3): 597-612.
基因ID Gene ID | 基因名称 Gene name | 开放阅读框/bp ORF | 氨基酸数/aa Size | 分子量/kD Molecular weight | 等电点 pI | 不稳定系数 The instabi- lity index | 亲水性 GRAVY | 信号肽 Signal peptide | 亚细胞定位 Subcellular localization |
---|---|---|---|---|---|---|---|---|---|
Dlo000316 | DLGDSL1 | 1 167 | 388 | 42.94 | 5.42 | 28.17 | -0.12 | 有 Yes | 叶绿体Chloroplast |
Dlo001274 | DLGDSL2 | 1 101 | 366 | 40.98 | 7.52 | 33.37 | -0.16 | 有 Yes | 内质网Endoplasmic reticulum |
Dlo001275 | DLGDSL3 | 1 101 | 366 | 40.82 | 6.93 | 32.28 | -0.15 | 有 Yes | 质膜Plasma membrane |
Dlo003341 | DLGDSL4 | 1 023 | 340 | 37.70 | 6.33 | 34.55 | -0.13 | 无 No | 细胞骨架Cytoskleton |
Dlo003368 | DLGDSL5 | 867 | 288 | 31.79 | 7.59 | 32.64 | -0.12 | 无 No | 细胞外基质Extracell |
Dlo003369 | DLGDSL6 | 1 083 | 360 | 38.37 | 8.00 | 28.46 | 0.18 | 有 Yes | 细胞外基质Extracell |
Dlo003726 | DLGDSL7 | 1 092 | 363 | 40.07 | 9.20 | 27.33 | -0.11 | 有 Yes | 叶绿体/细胞外基质 Chloroplast/Extracell |
Dlo003857 | DLGDSL8 | 1 446 | 481 | 53.08 | 5.23 | 34.14 | 0.06 | 有 Yes | 质膜Plasma membrane |
Dlo004146 | DLGDSL9 | 1 101 | 366 | 40.31 | 5.55 | 39.39 | 0.04 | 有 Yes | 过氧物酶体Peroxisome |
Dlo004148 | DLGDSL10 | 1 104 | 367 | 40.39 | 8.43 | 29.70 | -0.05 | 有 Yes | 过氧物酶体Peroxisome |
Dlo004149 | DLGDSL11 | 1 113 | 370 | 40.58 | 8.17 | 35.43 | -0.04 | 有 Yes | 细胞外基质Extracell |
Dlo004150 | DLGDSL12 | 1 107 | 368 | 40.63 | 8.99 | 35.60 | -0.01 | 有 Yes | 细胞外基质Extracell |
Dlo004345 | DLGDSL13 | 1 116 | 371 | 40.72 | 5.62 | 37.99 | -0.08 | 有 Yes | 细胞外基质Extracell |
Dlo004346 | DLGDSL14 | 1 101 | 366 | 40.19 | 9.25 | 39.46 | -0.04 | 有 Yes | 细胞外基质Extracell |
Dlo004347 | DLGDSL15 | 1 110 | 369 | 40.53 | 8.78 | 30.98 | -0.01 | 有 Yes | 细胞外基质Extracell |
Dlo004495 | DLGDSL16 | 1 116 | 371 | 40.69 | 6.10 | 37.58 | -0.07 | 有 Yes | 细胞外基质Extracell |
Dlo004496 | DLGDSL17 | 999 | 332 | 36.12 | 9.05 | 36.33 | 0 | 有 Yes | 细胞外基质Extracell |
Dlo004497 | DLGDSL18 | 999 | 332 | 36.12 | 9.05 | 36.33 | 0 | 有 Yes | 细胞外基质Extracell |
Dlo004498 | DLGDSL19 | 1 074 | 357 | 39.06 | 8.45 | 31.23 | -0.04 | 有 Yes | 叶绿体Chloroplast |
Dlo005884 | DLGDSL20 | 1 164 | 387 | 42.84 | 8.56 | 32.73 | 0.01 | 有 Yes | 细胞核Nucleus |
Dlo006046 | DLGDSL21 | 996 | 331 | 37.43 | 9.52 | 28.81 | -0.27 | 无 No | 叶绿体Chloroplast |
Dlo006047 | DLGDSL22 | 624 | 207 | 23.36 | 5.35 | 47.05 | -0.58 | 无 No | 细胞质Cytoplasm |
Dlo006048 | DLGDSL23 | 1 131 | 376 | 41.79 | 6.20 | 22.52 | -0.14 | 有 Yes | 叶绿体Chloroplast |
Dlo006049 | DLGDSL24 | 1 119 | 372 | 41.79 | 9.21 | 39.46 | -0.35 | 无 No | 细胞外基质Extracell |
Dlo006050 | DLGDSL25 | 1 686 | 561 | 62.33 | 9.24 | 31.14 | -0.27 | 无 No | 线粒体Mitochondrion |
Dlo006051 | DLGDSL26 | 1 098 | 365 | 40.35 | 9.34 | 25.33 | -0.48 | 无 No | 细胞质Cytoplasm |
Dlo006445 | DLGDSL27 | 1 146 | 381 | 41.12 | 8.94 | 27.42 | 0.02 | 有 Yes | 细胞外基质Extracell |
Dlo006446 | DLGDSL28 | 1 002 | 333 | 35.79 | 9.15 | 21.43 | 0.06 | 有 Yes | 细胞质Cytoplasm |
Dlo007129 | DLGDSL29 | 1 167 | 388 | 43.16 | 5.02 | 33.49 | -0.08 | 有 Yes | 细胞外基质Extracell |
Dlo007130 | DLGDSL30 | 1 167 | 388 | 43.32 | 4.69 | 33.41 | -0.16 | 有 Yes | 细胞外基质Extracell |
Dlo007131 | DLGDSL31 | 561 | 186 | 20.53 | 4.56 | 33.37 | -0.07 | 有 Yes | 叶绿体Chloroplast |
Dlo007132 | DLGDSL32 | 1 092 | 363 | 40.21 | 4.60 | 30.37 | -0.11 | 有 Yes | 细胞外基质Extracell |
Dlo008436 | DLGDSL33 | 1 050 | 349 | 39.54 | 4.82 | 27.58 | -0.14 | 有 Yes | 细胞质/细胞外基质 Cytoplasm/Extracell |
Dlo008488 | DLGDSL34 | 918 | 305 | 34.06 | 8.91 | 30.33 | -0.12 | 有 Yes | 叶绿体Chloroplast |
Dlo008489 | DLGDSL35 | 1 107 | 368 | 40.66 | 7.03 | 29.22 | -0.11 | 有 Yes | 细胞核/液泡 Nucleus/Vacuole |
Dlo008490 | DLGDSL36 | 1 005 | 334 | 37.49 | 7.55 | 27.31 | -0.13 | 无 No | 细胞质Cytoplasm |
Dlo008545 | DLGDSL37 | 1 101 | 366 | 40.92 | 8.56 | 34.17 | -0.08 | 有 Yes | 液泡Vacuole |
Dlo008546 | DLGDSL38 | 222 | 73 | 8.09 | 5.60 | 14.08 | -0.46 | 无 No | 细胞核Nucleus |
Dlo011392 | DLGDSL39 | 894 | 297 | 32.80 | 7.65 | 35.26 | 0.06 | 有 Yes | 细胞外基质Extracell |
Dlo011415 | DLGDSL40 | 894 | 297 | 32.75 | 7.65 | 33.93 | 0.09 | 有 Yes | 细胞外基质Extracell |
Dlo011478 | DLGDSL41 | 1 167 | 388 | 43.15 | 7.11 | 34.06 | -0.17 | 有 Yes | 细胞外基质Extracell |
Dlo011955 | DLGDSL42 | 1 311 | 436 | 48.64 | 9.01 | 37.95 | -0.24 | 有 Yes | 叶绿体/液泡 Chloroplast/Vacuole |
基因ID Gene ID | 基因名称 Gene name | 开放阅读框/bp ORF | 氨基酸数/aa Size | 分子量/kD Molecular weight | 等电点 pI | 不稳定系数 The instabi- lity index | 亲水性 GRAVY | 信号肽 Signal peptide | 亚细胞定位 Subcellular localization |
Dlo011956 | DLGDSL43 | 1 104 | 367 | 40.77 | 6.44 | 30.29 | -0.09 | 有 Yes | 细胞外基质Extracell |
Dlo012251 | DLGDSL44 | 1 353 | 450 | 50.16 | 5.44 | 36.36 | -0.13 | 有 Yes | 液泡Vacuole |
Dlo012654 | DLGDSL45 | 1 131 | 376 | 40.78 | 5.38 | 36.22 | 0.05 | 有 Yes | 线粒体/液泡 Mitochondrion/Vacuole |
Dlo013347 | DLGDSL46 | 1 581 | 526 | 57.80 | 7.19 | 32.54 | -0.06 | 有 Yes | 内质网Endoplasmic reticulum |
Dlo013348 | DLGDSL47 | 759 | 252 | 27.24 | 5.80 | 26.12 | 0.10 | 有 Yes | 叶绿体Chloroplast |
Dlo013350 | DLGDSL48 | 414 | 137 | 14.69 | 4.53 | 27.80 | 0.29 | 有 Yes | 细胞质Cytoplasm |
Dlo013351 | DLGDSL49 | 633 | 210 | 23.36 | 6.74 | 35.80 | -0.09 | 无 No | 叶绿体Chloroplast |
Dlo013352 | DLGDSL50 | 462 | 153 | 16.18 | 8.61 | 36.41 | 0.26 | 有 Yes | 细胞外基质Extracell |
Dlo014916 | DLGDSL51 | 1 116 | 371 | 40.33 | 8.89 | 24.93 | -0.04 | 有 Yes | 过氧物酶体Peroxisome |
Dlo015050 | DLGDSL52 | 1 092 | 363 | 39.38 | 5.09 | 22.52 | -0.03 | 有 Yes | 细胞质Cytoplasm |
Dlo015051 | DLGDSL53 | 1 047 | 348 | 38.79 | 9.18 | 30.01 | -0.34 | 无 No | 细胞外基质Extracell |
Dlo015279 | DLGDSL54 | 1 113 | 370 | 40.56 | 9.09 | 41.62 | 0.17 | 有 Yes | 液泡Vacuole |
Dlo015440 | DLGDSL55 | 414 | 137 | 15.35 | 10.03 | 55.39 | 0.14 | 无 No | 叶绿体Chloroplast |
Dlo015441 | DLGDSL56 | 897 | 298 | 33.14 | 5.96 | 46.73 | 0.08 | 有 Yes | 液泡Vacuole |
Dlo015778 | DLGDSL57 | 1 119 | 372 | 40.88 | 8.78 | 22.47 | -0.08 | 有 Yes | 叶绿体/细胞核 Chloroplast/Nucleus |
Dlo016597 | DLGDSL58 | 1 044 | 347 | 37.54 | 5.06 | 34.60 | -0.08 | 有 Yes | 细胞外基质Extracell |
Dlo018044 | DLGDSL59 | 489 | 162 | 17.84 | 9.51 | 58.45 | -0.19 | 无 No | 叶绿体Chloroplast |
Dlo018809 | DLGDSL60 | 1 266 | 421 | 46.81 | 6.21 | 38.27 | -0.28 | 有 Yes | 线粒体Mitochondrion |
Dlo018810 | DLGDSL61 | 2 301 | 766 | 85.50 | 5.89 | 37.09 | -0.40 | 无 No | 线粒体Mitochondrion |
Dlo018811 | DLGDSL62 | 1 095 | 364 | 40.33 | 5.43 | 36.78 | -0.07 | 有 Yes | 叶绿体Chloroplast |
Dlo018812 | DLGDSL63 | 1 155 | 384 | 41.98 | 8.63 | 39.42 | -0.12 | 有 Yes | 细胞外基质Extracell |
Dlo018813 | DLGDSL64 | 1 002 | 333 | 37.13 | 9.22 | 31.41 | -0.09 | 无 No | 细胞质Cytoplasm |
Dlo018821 | DLGDSL65 | 1 155 | 384 | 42.61 | 8.78 | 34.10 | -0.08 | 有 Yes | 内质网Endoplasmic reticulum |
Dlo018822 | DLGDSL66 | 1 167 | 388 | 43.14 | 8.93 | 34.50 | -0.05 | 有 Yes | 叶绿体/细胞外基质 Chloroplast/Extracell |
Dlo018823 | DLGDSL67 | 1 155 | 384 | 41.99 | 8.63 | 39.92 | -0.13 | 有 Yes | 细胞外基质Extracell |
Dlo018824 | DLGDSL68 | 1 200 | 399 | 44.02 | 5.70 | 35.37 | -0.09 | 有 Yes | 细胞外基质Extracell |
Dlo018825 | DLGDSL69 | 1 236 | 411 | 45.68 | 6.07 | 41.05 | -0.29 | 无 No | 叶绿体/线粒体 Chloroplast/Mitochondrion |
Dlo018826 | DLGDSL70 | 1 182 | 393 | 43.94 | 7.60 | 35.32 | -0.31 | 有 Yes | 叶绿体Chloroplast |
Dlo018827 | DLGDSL71 | 711 | 236 | 26.64 | 7.03 | 37.54 | -0.31 | 无 No | 细胞外基质Extracell |
Dlo018828 | DLGDSL72 | 591 | 196 | 21.55 | 8.62 | 38.79 | -0.23 | 有 Yes | 细胞核/质膜 Nucleus/Plasma membrane |
Dlo018829 | DLGDSL73 | 1 185 | 394 | 43.98 | 5.42 | 34.99 | -0.18 | 有 Yes | 细胞外基质Extracell |
Dlo018866 | DLGDSL74 | 2 490 | 829 | 87.76 | 8.83 | 45.02 | -0.72 | 有 Yes | 细胞核Nucleus |
Dlo018888 | DLGDSL75 | 1 413 | 470 | 50.96 | 8.88 | 41.37 | -0.26 | 有 Yes | 细胞外基质Extracell |
Dlo020895 | DLGDSL76 | 1 071 | 356 | 39.13 | 7.53 | 28.29 | -0.09 | 无 No | 叶绿体/细胞外基质 Chloroplast/Extracell |
Dlo020898 | DLGDSL77 | 858 | 285 | 31.37 | 5.33 | 32.75 | -0.19 | 无 No | 叶绿体Chloroplast |
Dlo021059 | DLGDSL78 | 858 | 285 | 31.36 | 5.33 | 32.18 | -0.19 | 无 No | 叶绿体Chloroplast |
Dlo021062 | DLGDSL79 | 1 071 | 356 | 39.17 | 6.88 | 29.62 | -0.11 | 有 Yes | 细胞外基质Extracell |
Dlo021694 | DLGDSL80 | 1 101 | 366 | 40.98 | 5.69 | 22.79 | -0.03 | 有 Yes | 液泡Vacuole |
Dlo021696 | DLGDSL81 | 1 095 | 364 | 40.80 | 9.08 | 31.63 | 0.05 | 有 Yes | 细胞核Nucleus |
Dlo021719 | DLGDSL82 | 1 140 | 379 | 41.98 | 8.65 | 42.73 | -0.13 | 无 No | 细胞质Cytoplasm |
Dlo021829 | DLGDSL83 | 2 457 | 818 | 91.37 | 8.14 | 46.45 | -0.34 | 有 Yes | 细胞外基质Extracell |
基因ID Gene ID | 基因名称 Gene name | 开放阅读框/bp ORF | 氨基酸数/aa Size | 分子量/kD Molecular weight | 等电点 pI | 不稳定系数 The instabi- lity index | 亲水性 GRAVY | 信号肽 Signal peptide | 亚细胞定位 Subcellular localization |
Dlo021830 | DLGDSL84 | 1 092 | 363 | 40.06 | 5.54 | 30.40 | -0.27 | 有 Yes | 细胞外基质/高尔基体 Extracell/Golgi apparatus |
Dlo021839 | DLGDSL85 | 1 101 | 366 | 40.78 | 9.30 | 32.43 | -0.25 | 有 Yes | 细胞外基质Extracell |
Dlo022859 | DLGDSL86 | 1 113 | 370 | 40.22 | 5.64 | 34.26 | 0.12 | 有 Yes | 叶绿体/液泡 Chloroplast/vacu |
Dlo023097 | DLGDSL87 | 1 131 | 376 | 40.93 | 9.29 | 31.76 | 0.07 | 有 Yes | 液泡Vacuole |
Dlo024293 | DLGDSL88 | 444 | 147 | 16.44 | 8.81 | 31.55 | -0.09 | 无 No | 细胞质Cytoplasm |
Dlo024294 | DLGDSL89 | 567 | 188 | 21.66 | 6.73 | 24.42 | -0.33 | 无 No | 细胞骨架Cytoskeleton |
Dlo024299 | DLGDSL90 | 465 | 154 | 17.31 | 7.69 | 20.21 | -0.05 | 无 No | 细胞质Cytoplasm |
Dlo024338 | DLGDSL91 | 1 284 | 427 | 47.21 | 8.25 | 38.18 | -0.26 | 无 No | 过氧物酶体Peroxisome |
Dlo024344 | DLGDSL92 | 972 | 323 | 36.11 | 6.55 | 31.35 | -0.17 | 无 No | 细胞质Cytoplasm |
Dlo024345 | DLGDSL93 | 972 | 323 | 36.11 | 6.55 | 31.35 | -0.17 | 无 No | 细胞质Cytoplasm |
Dlo024482 | DLGDSL94 | 1 023 | 340 | 37.62 | 8.80 | 37.81 | -0.19 | 无 No | 细胞外基质Extracell |
Dlo025454 | DLGDSL95 | 1 110 | 369 | 41.35 | 5.63 | 36.29 | 0.06 | 有 Yes | 细胞质Cytoplasm |
Dlo026075 | DLGDSL96 | 1 062 | 353 | 38.56 | 8.47 | 33.85 | 0.06 | 有 Yes | 细胞外基质Extracell |
Dlo027030 | DLGDSL97 | 1 092 | 363 | 40.93 | 8.65 | 33.01 | -0.21 | 有 Yes | 叶绿体/细胞质 Chloroplast/Cytoplasm |
Dlo027031 | DLGDSL98 | 1 068 | 355 | 39.56 | 8.01 | 31.74 | -0.02 | 有 Yes | 细胞外基质Extracell |
Dlo027690 | DLGDSL99 | 1 176 | 391 | 44.02 | 6.60 | 38.14 | -0.33 | 有 Yes | 细胞核/细胞质 Nucleus/Cytoplasm |
Dlo027692 | DLGDSL100 | 810 | 269 | 30.17 | 6.44 | 40.11 | -0.19 | 有 Yes | 细胞质Cytoplasm |
Dlo027693 | DLGDSL101 | 1 140 | 379 | 42.41 | 6.07 | 36.44 | -0.27 | 有 Yes | 内质网Endoplasmic reticulum |
Dlo028167 | DLGDSL102 | 1 041 | 346 | 38.63 | 5.39 | 27.19 | -0.04 | 有 Yes | 细胞质Cytoplasm |
Dlo028168 | DLGDSL103 | 960 | 319 | 35.64 | 5.22 | 34.19 | -0.03 | 有 Yes | 细胞外基质Extracell |
Dlo029634 | DLGDSL104 | 1 077 | 358 | 39.45 | 9.08 | 32.22 | -0.11 | 有 Yes | 叶绿体Chloroplast |
Dlo030986 | DLGDSL105 | 1 104 | 367 | 40.23 | 5.37 | 31.80 | -0.14 | 有 Yes | 细胞外基质Extracell |
Dlo031180 | DLGDSL106 | 810 | 269 | 28.88 | 5.12 | 27.46 | 0.14 | 有 Yes | 细胞外基质Extracell |
Dlo031921 | DLGDSL107 | 1 170 | 389 | 43.18 | 8.78 | 36.17 | -0.11 | 有 Yes | 叶绿体Chloroplast |
Dlo032044 | DLGDSL108 | 804 | 267 | 29.89 | 7.09 | 50.80 | -0.26 | 无 No | 叶绿体Chloroplast |
Dlo032046 | DLGDSL109 | 798 | 265 | 29.70 | 5.63 | 47.67 | -0.03 | 无 No | 质膜Plasma membrane |
Dlo032495 | DLGDSL110 | 1 263 | 420 | 47.18 | 4.82 | 49.24 | -0.06 | 有 Yes | 液泡Vacuole |
Dlo032524 | DLGDSL111 | 1 149 | 382 | 42.75 | 6.01 | 33.02 | -0.02 | 无 No | 质膜Plasma membrane |
Dlo033028 | DLGDSL112 | 2 433 | 810 | 92.63 | 7.25 | 43.64 | -0.36 | 无 No | 叶绿体Chloroplast |
Dlo033030 | DLGDSL113 | 369 | 122 | 13.62 | 8.16 | 27.10 | 0.06 | 无 No | 细胞质Cytoplasm |
Dlo033228 | DLGDSL114 | 1 146 | 381 | 41.12 | 8.94 | 27.42 | 0.02 | 有 Yes | 细胞外基质Extracell |
Dlo033229 | DLGDSL115 | 1 092 | 363 | 38.87 | 8.97 | 20.51 | -0.02 | 有 Yes | 线粒体Mitochondrion |
Dlo033340 | DLGDSL116 | 1 113 | 370 | 40.19 | 5.41 | 34.06 | 0.12 | 有 Yes | 液泡Vacuole |
Dlo034402 | DLGDSL117 | 756 | 251 | 27.63 | 9.24 | 34.38 | -0.24 | 无 No | 细胞核Nucleus |
Dlo034801 | DLGDSL118 | 1 122 | 373 | 41.26 | 7.45 | 31.18 | -0.02 | 有 Yes | 线粒体Mitochondrion |
表1 DlGDSL家族成员蛋白质理化性质
Table 1 The physicochemical properties of the proteins of DlGDSL family members
基因ID Gene ID | 基因名称 Gene name | 开放阅读框/bp ORF | 氨基酸数/aa Size | 分子量/kD Molecular weight | 等电点 pI | 不稳定系数 The instabi- lity index | 亲水性 GRAVY | 信号肽 Signal peptide | 亚细胞定位 Subcellular localization |
---|---|---|---|---|---|---|---|---|---|
Dlo000316 | DLGDSL1 | 1 167 | 388 | 42.94 | 5.42 | 28.17 | -0.12 | 有 Yes | 叶绿体Chloroplast |
Dlo001274 | DLGDSL2 | 1 101 | 366 | 40.98 | 7.52 | 33.37 | -0.16 | 有 Yes | 内质网Endoplasmic reticulum |
Dlo001275 | DLGDSL3 | 1 101 | 366 | 40.82 | 6.93 | 32.28 | -0.15 | 有 Yes | 质膜Plasma membrane |
Dlo003341 | DLGDSL4 | 1 023 | 340 | 37.70 | 6.33 | 34.55 | -0.13 | 无 No | 细胞骨架Cytoskleton |
Dlo003368 | DLGDSL5 | 867 | 288 | 31.79 | 7.59 | 32.64 | -0.12 | 无 No | 细胞外基质Extracell |
Dlo003369 | DLGDSL6 | 1 083 | 360 | 38.37 | 8.00 | 28.46 | 0.18 | 有 Yes | 细胞外基质Extracell |
Dlo003726 | DLGDSL7 | 1 092 | 363 | 40.07 | 9.20 | 27.33 | -0.11 | 有 Yes | 叶绿体/细胞外基质 Chloroplast/Extracell |
Dlo003857 | DLGDSL8 | 1 446 | 481 | 53.08 | 5.23 | 34.14 | 0.06 | 有 Yes | 质膜Plasma membrane |
Dlo004146 | DLGDSL9 | 1 101 | 366 | 40.31 | 5.55 | 39.39 | 0.04 | 有 Yes | 过氧物酶体Peroxisome |
Dlo004148 | DLGDSL10 | 1 104 | 367 | 40.39 | 8.43 | 29.70 | -0.05 | 有 Yes | 过氧物酶体Peroxisome |
Dlo004149 | DLGDSL11 | 1 113 | 370 | 40.58 | 8.17 | 35.43 | -0.04 | 有 Yes | 细胞外基质Extracell |
Dlo004150 | DLGDSL12 | 1 107 | 368 | 40.63 | 8.99 | 35.60 | -0.01 | 有 Yes | 细胞外基质Extracell |
Dlo004345 | DLGDSL13 | 1 116 | 371 | 40.72 | 5.62 | 37.99 | -0.08 | 有 Yes | 细胞外基质Extracell |
Dlo004346 | DLGDSL14 | 1 101 | 366 | 40.19 | 9.25 | 39.46 | -0.04 | 有 Yes | 细胞外基质Extracell |
Dlo004347 | DLGDSL15 | 1 110 | 369 | 40.53 | 8.78 | 30.98 | -0.01 | 有 Yes | 细胞外基质Extracell |
Dlo004495 | DLGDSL16 | 1 116 | 371 | 40.69 | 6.10 | 37.58 | -0.07 | 有 Yes | 细胞外基质Extracell |
Dlo004496 | DLGDSL17 | 999 | 332 | 36.12 | 9.05 | 36.33 | 0 | 有 Yes | 细胞外基质Extracell |
Dlo004497 | DLGDSL18 | 999 | 332 | 36.12 | 9.05 | 36.33 | 0 | 有 Yes | 细胞外基质Extracell |
Dlo004498 | DLGDSL19 | 1 074 | 357 | 39.06 | 8.45 | 31.23 | -0.04 | 有 Yes | 叶绿体Chloroplast |
Dlo005884 | DLGDSL20 | 1 164 | 387 | 42.84 | 8.56 | 32.73 | 0.01 | 有 Yes | 细胞核Nucleus |
Dlo006046 | DLGDSL21 | 996 | 331 | 37.43 | 9.52 | 28.81 | -0.27 | 无 No | 叶绿体Chloroplast |
Dlo006047 | DLGDSL22 | 624 | 207 | 23.36 | 5.35 | 47.05 | -0.58 | 无 No | 细胞质Cytoplasm |
Dlo006048 | DLGDSL23 | 1 131 | 376 | 41.79 | 6.20 | 22.52 | -0.14 | 有 Yes | 叶绿体Chloroplast |
Dlo006049 | DLGDSL24 | 1 119 | 372 | 41.79 | 9.21 | 39.46 | -0.35 | 无 No | 细胞外基质Extracell |
Dlo006050 | DLGDSL25 | 1 686 | 561 | 62.33 | 9.24 | 31.14 | -0.27 | 无 No | 线粒体Mitochondrion |
Dlo006051 | DLGDSL26 | 1 098 | 365 | 40.35 | 9.34 | 25.33 | -0.48 | 无 No | 细胞质Cytoplasm |
Dlo006445 | DLGDSL27 | 1 146 | 381 | 41.12 | 8.94 | 27.42 | 0.02 | 有 Yes | 细胞外基质Extracell |
Dlo006446 | DLGDSL28 | 1 002 | 333 | 35.79 | 9.15 | 21.43 | 0.06 | 有 Yes | 细胞质Cytoplasm |
Dlo007129 | DLGDSL29 | 1 167 | 388 | 43.16 | 5.02 | 33.49 | -0.08 | 有 Yes | 细胞外基质Extracell |
Dlo007130 | DLGDSL30 | 1 167 | 388 | 43.32 | 4.69 | 33.41 | -0.16 | 有 Yes | 细胞外基质Extracell |
Dlo007131 | DLGDSL31 | 561 | 186 | 20.53 | 4.56 | 33.37 | -0.07 | 有 Yes | 叶绿体Chloroplast |
Dlo007132 | DLGDSL32 | 1 092 | 363 | 40.21 | 4.60 | 30.37 | -0.11 | 有 Yes | 细胞外基质Extracell |
Dlo008436 | DLGDSL33 | 1 050 | 349 | 39.54 | 4.82 | 27.58 | -0.14 | 有 Yes | 细胞质/细胞外基质 Cytoplasm/Extracell |
Dlo008488 | DLGDSL34 | 918 | 305 | 34.06 | 8.91 | 30.33 | -0.12 | 有 Yes | 叶绿体Chloroplast |
Dlo008489 | DLGDSL35 | 1 107 | 368 | 40.66 | 7.03 | 29.22 | -0.11 | 有 Yes | 细胞核/液泡 Nucleus/Vacuole |
Dlo008490 | DLGDSL36 | 1 005 | 334 | 37.49 | 7.55 | 27.31 | -0.13 | 无 No | 细胞质Cytoplasm |
Dlo008545 | DLGDSL37 | 1 101 | 366 | 40.92 | 8.56 | 34.17 | -0.08 | 有 Yes | 液泡Vacuole |
Dlo008546 | DLGDSL38 | 222 | 73 | 8.09 | 5.60 | 14.08 | -0.46 | 无 No | 细胞核Nucleus |
Dlo011392 | DLGDSL39 | 894 | 297 | 32.80 | 7.65 | 35.26 | 0.06 | 有 Yes | 细胞外基质Extracell |
Dlo011415 | DLGDSL40 | 894 | 297 | 32.75 | 7.65 | 33.93 | 0.09 | 有 Yes | 细胞外基质Extracell |
Dlo011478 | DLGDSL41 | 1 167 | 388 | 43.15 | 7.11 | 34.06 | -0.17 | 有 Yes | 细胞外基质Extracell |
Dlo011955 | DLGDSL42 | 1 311 | 436 | 48.64 | 9.01 | 37.95 | -0.24 | 有 Yes | 叶绿体/液泡 Chloroplast/Vacuole |
基因ID Gene ID | 基因名称 Gene name | 开放阅读框/bp ORF | 氨基酸数/aa Size | 分子量/kD Molecular weight | 等电点 pI | 不稳定系数 The instabi- lity index | 亲水性 GRAVY | 信号肽 Signal peptide | 亚细胞定位 Subcellular localization |
Dlo011956 | DLGDSL43 | 1 104 | 367 | 40.77 | 6.44 | 30.29 | -0.09 | 有 Yes | 细胞外基质Extracell |
Dlo012251 | DLGDSL44 | 1 353 | 450 | 50.16 | 5.44 | 36.36 | -0.13 | 有 Yes | 液泡Vacuole |
Dlo012654 | DLGDSL45 | 1 131 | 376 | 40.78 | 5.38 | 36.22 | 0.05 | 有 Yes | 线粒体/液泡 Mitochondrion/Vacuole |
Dlo013347 | DLGDSL46 | 1 581 | 526 | 57.80 | 7.19 | 32.54 | -0.06 | 有 Yes | 内质网Endoplasmic reticulum |
Dlo013348 | DLGDSL47 | 759 | 252 | 27.24 | 5.80 | 26.12 | 0.10 | 有 Yes | 叶绿体Chloroplast |
Dlo013350 | DLGDSL48 | 414 | 137 | 14.69 | 4.53 | 27.80 | 0.29 | 有 Yes | 细胞质Cytoplasm |
Dlo013351 | DLGDSL49 | 633 | 210 | 23.36 | 6.74 | 35.80 | -0.09 | 无 No | 叶绿体Chloroplast |
Dlo013352 | DLGDSL50 | 462 | 153 | 16.18 | 8.61 | 36.41 | 0.26 | 有 Yes | 细胞外基质Extracell |
Dlo014916 | DLGDSL51 | 1 116 | 371 | 40.33 | 8.89 | 24.93 | -0.04 | 有 Yes | 过氧物酶体Peroxisome |
Dlo015050 | DLGDSL52 | 1 092 | 363 | 39.38 | 5.09 | 22.52 | -0.03 | 有 Yes | 细胞质Cytoplasm |
Dlo015051 | DLGDSL53 | 1 047 | 348 | 38.79 | 9.18 | 30.01 | -0.34 | 无 No | 细胞外基质Extracell |
Dlo015279 | DLGDSL54 | 1 113 | 370 | 40.56 | 9.09 | 41.62 | 0.17 | 有 Yes | 液泡Vacuole |
Dlo015440 | DLGDSL55 | 414 | 137 | 15.35 | 10.03 | 55.39 | 0.14 | 无 No | 叶绿体Chloroplast |
Dlo015441 | DLGDSL56 | 897 | 298 | 33.14 | 5.96 | 46.73 | 0.08 | 有 Yes | 液泡Vacuole |
Dlo015778 | DLGDSL57 | 1 119 | 372 | 40.88 | 8.78 | 22.47 | -0.08 | 有 Yes | 叶绿体/细胞核 Chloroplast/Nucleus |
Dlo016597 | DLGDSL58 | 1 044 | 347 | 37.54 | 5.06 | 34.60 | -0.08 | 有 Yes | 细胞外基质Extracell |
Dlo018044 | DLGDSL59 | 489 | 162 | 17.84 | 9.51 | 58.45 | -0.19 | 无 No | 叶绿体Chloroplast |
Dlo018809 | DLGDSL60 | 1 266 | 421 | 46.81 | 6.21 | 38.27 | -0.28 | 有 Yes | 线粒体Mitochondrion |
Dlo018810 | DLGDSL61 | 2 301 | 766 | 85.50 | 5.89 | 37.09 | -0.40 | 无 No | 线粒体Mitochondrion |
Dlo018811 | DLGDSL62 | 1 095 | 364 | 40.33 | 5.43 | 36.78 | -0.07 | 有 Yes | 叶绿体Chloroplast |
Dlo018812 | DLGDSL63 | 1 155 | 384 | 41.98 | 8.63 | 39.42 | -0.12 | 有 Yes | 细胞外基质Extracell |
Dlo018813 | DLGDSL64 | 1 002 | 333 | 37.13 | 9.22 | 31.41 | -0.09 | 无 No | 细胞质Cytoplasm |
Dlo018821 | DLGDSL65 | 1 155 | 384 | 42.61 | 8.78 | 34.10 | -0.08 | 有 Yes | 内质网Endoplasmic reticulum |
Dlo018822 | DLGDSL66 | 1 167 | 388 | 43.14 | 8.93 | 34.50 | -0.05 | 有 Yes | 叶绿体/细胞外基质 Chloroplast/Extracell |
Dlo018823 | DLGDSL67 | 1 155 | 384 | 41.99 | 8.63 | 39.92 | -0.13 | 有 Yes | 细胞外基质Extracell |
Dlo018824 | DLGDSL68 | 1 200 | 399 | 44.02 | 5.70 | 35.37 | -0.09 | 有 Yes | 细胞外基质Extracell |
Dlo018825 | DLGDSL69 | 1 236 | 411 | 45.68 | 6.07 | 41.05 | -0.29 | 无 No | 叶绿体/线粒体 Chloroplast/Mitochondrion |
Dlo018826 | DLGDSL70 | 1 182 | 393 | 43.94 | 7.60 | 35.32 | -0.31 | 有 Yes | 叶绿体Chloroplast |
Dlo018827 | DLGDSL71 | 711 | 236 | 26.64 | 7.03 | 37.54 | -0.31 | 无 No | 细胞外基质Extracell |
Dlo018828 | DLGDSL72 | 591 | 196 | 21.55 | 8.62 | 38.79 | -0.23 | 有 Yes | 细胞核/质膜 Nucleus/Plasma membrane |
Dlo018829 | DLGDSL73 | 1 185 | 394 | 43.98 | 5.42 | 34.99 | -0.18 | 有 Yes | 细胞外基质Extracell |
Dlo018866 | DLGDSL74 | 2 490 | 829 | 87.76 | 8.83 | 45.02 | -0.72 | 有 Yes | 细胞核Nucleus |
Dlo018888 | DLGDSL75 | 1 413 | 470 | 50.96 | 8.88 | 41.37 | -0.26 | 有 Yes | 细胞外基质Extracell |
Dlo020895 | DLGDSL76 | 1 071 | 356 | 39.13 | 7.53 | 28.29 | -0.09 | 无 No | 叶绿体/细胞外基质 Chloroplast/Extracell |
Dlo020898 | DLGDSL77 | 858 | 285 | 31.37 | 5.33 | 32.75 | -0.19 | 无 No | 叶绿体Chloroplast |
Dlo021059 | DLGDSL78 | 858 | 285 | 31.36 | 5.33 | 32.18 | -0.19 | 无 No | 叶绿体Chloroplast |
Dlo021062 | DLGDSL79 | 1 071 | 356 | 39.17 | 6.88 | 29.62 | -0.11 | 有 Yes | 细胞外基质Extracell |
Dlo021694 | DLGDSL80 | 1 101 | 366 | 40.98 | 5.69 | 22.79 | -0.03 | 有 Yes | 液泡Vacuole |
Dlo021696 | DLGDSL81 | 1 095 | 364 | 40.80 | 9.08 | 31.63 | 0.05 | 有 Yes | 细胞核Nucleus |
Dlo021719 | DLGDSL82 | 1 140 | 379 | 41.98 | 8.65 | 42.73 | -0.13 | 无 No | 细胞质Cytoplasm |
Dlo021829 | DLGDSL83 | 2 457 | 818 | 91.37 | 8.14 | 46.45 | -0.34 | 有 Yes | 细胞外基质Extracell |
基因ID Gene ID | 基因名称 Gene name | 开放阅读框/bp ORF | 氨基酸数/aa Size | 分子量/kD Molecular weight | 等电点 pI | 不稳定系数 The instabi- lity index | 亲水性 GRAVY | 信号肽 Signal peptide | 亚细胞定位 Subcellular localization |
Dlo021830 | DLGDSL84 | 1 092 | 363 | 40.06 | 5.54 | 30.40 | -0.27 | 有 Yes | 细胞外基质/高尔基体 Extracell/Golgi apparatus |
Dlo021839 | DLGDSL85 | 1 101 | 366 | 40.78 | 9.30 | 32.43 | -0.25 | 有 Yes | 细胞外基质Extracell |
Dlo022859 | DLGDSL86 | 1 113 | 370 | 40.22 | 5.64 | 34.26 | 0.12 | 有 Yes | 叶绿体/液泡 Chloroplast/vacu |
Dlo023097 | DLGDSL87 | 1 131 | 376 | 40.93 | 9.29 | 31.76 | 0.07 | 有 Yes | 液泡Vacuole |
Dlo024293 | DLGDSL88 | 444 | 147 | 16.44 | 8.81 | 31.55 | -0.09 | 无 No | 细胞质Cytoplasm |
Dlo024294 | DLGDSL89 | 567 | 188 | 21.66 | 6.73 | 24.42 | -0.33 | 无 No | 细胞骨架Cytoskeleton |
Dlo024299 | DLGDSL90 | 465 | 154 | 17.31 | 7.69 | 20.21 | -0.05 | 无 No | 细胞质Cytoplasm |
Dlo024338 | DLGDSL91 | 1 284 | 427 | 47.21 | 8.25 | 38.18 | -0.26 | 无 No | 过氧物酶体Peroxisome |
Dlo024344 | DLGDSL92 | 972 | 323 | 36.11 | 6.55 | 31.35 | -0.17 | 无 No | 细胞质Cytoplasm |
Dlo024345 | DLGDSL93 | 972 | 323 | 36.11 | 6.55 | 31.35 | -0.17 | 无 No | 细胞质Cytoplasm |
Dlo024482 | DLGDSL94 | 1 023 | 340 | 37.62 | 8.80 | 37.81 | -0.19 | 无 No | 细胞外基质Extracell |
Dlo025454 | DLGDSL95 | 1 110 | 369 | 41.35 | 5.63 | 36.29 | 0.06 | 有 Yes | 细胞质Cytoplasm |
Dlo026075 | DLGDSL96 | 1 062 | 353 | 38.56 | 8.47 | 33.85 | 0.06 | 有 Yes | 细胞外基质Extracell |
Dlo027030 | DLGDSL97 | 1 092 | 363 | 40.93 | 8.65 | 33.01 | -0.21 | 有 Yes | 叶绿体/细胞质 Chloroplast/Cytoplasm |
Dlo027031 | DLGDSL98 | 1 068 | 355 | 39.56 | 8.01 | 31.74 | -0.02 | 有 Yes | 细胞外基质Extracell |
Dlo027690 | DLGDSL99 | 1 176 | 391 | 44.02 | 6.60 | 38.14 | -0.33 | 有 Yes | 细胞核/细胞质 Nucleus/Cytoplasm |
Dlo027692 | DLGDSL100 | 810 | 269 | 30.17 | 6.44 | 40.11 | -0.19 | 有 Yes | 细胞质Cytoplasm |
Dlo027693 | DLGDSL101 | 1 140 | 379 | 42.41 | 6.07 | 36.44 | -0.27 | 有 Yes | 内质网Endoplasmic reticulum |
Dlo028167 | DLGDSL102 | 1 041 | 346 | 38.63 | 5.39 | 27.19 | -0.04 | 有 Yes | 细胞质Cytoplasm |
Dlo028168 | DLGDSL103 | 960 | 319 | 35.64 | 5.22 | 34.19 | -0.03 | 有 Yes | 细胞外基质Extracell |
Dlo029634 | DLGDSL104 | 1 077 | 358 | 39.45 | 9.08 | 32.22 | -0.11 | 有 Yes | 叶绿体Chloroplast |
Dlo030986 | DLGDSL105 | 1 104 | 367 | 40.23 | 5.37 | 31.80 | -0.14 | 有 Yes | 细胞外基质Extracell |
Dlo031180 | DLGDSL106 | 810 | 269 | 28.88 | 5.12 | 27.46 | 0.14 | 有 Yes | 细胞外基质Extracell |
Dlo031921 | DLGDSL107 | 1 170 | 389 | 43.18 | 8.78 | 36.17 | -0.11 | 有 Yes | 叶绿体Chloroplast |
Dlo032044 | DLGDSL108 | 804 | 267 | 29.89 | 7.09 | 50.80 | -0.26 | 无 No | 叶绿体Chloroplast |
Dlo032046 | DLGDSL109 | 798 | 265 | 29.70 | 5.63 | 47.67 | -0.03 | 无 No | 质膜Plasma membrane |
Dlo032495 | DLGDSL110 | 1 263 | 420 | 47.18 | 4.82 | 49.24 | -0.06 | 有 Yes | 液泡Vacuole |
Dlo032524 | DLGDSL111 | 1 149 | 382 | 42.75 | 6.01 | 33.02 | -0.02 | 无 No | 质膜Plasma membrane |
Dlo033028 | DLGDSL112 | 2 433 | 810 | 92.63 | 7.25 | 43.64 | -0.36 | 无 No | 叶绿体Chloroplast |
Dlo033030 | DLGDSL113 | 369 | 122 | 13.62 | 8.16 | 27.10 | 0.06 | 无 No | 细胞质Cytoplasm |
Dlo033228 | DLGDSL114 | 1 146 | 381 | 41.12 | 8.94 | 27.42 | 0.02 | 有 Yes | 细胞外基质Extracell |
Dlo033229 | DLGDSL115 | 1 092 | 363 | 38.87 | 8.97 | 20.51 | -0.02 | 有 Yes | 线粒体Mitochondrion |
Dlo033340 | DLGDSL116 | 1 113 | 370 | 40.19 | 5.41 | 34.06 | 0.12 | 有 Yes | 液泡Vacuole |
Dlo034402 | DLGDSL117 | 756 | 251 | 27.63 | 9.24 | 34.38 | -0.24 | 无 No | 细胞核Nucleus |
Dlo034801 | DLGDSL118 | 1 122 | 373 | 41.26 | 7.45 | 31.18 | -0.02 | 有 Yes | 线粒体Mitochondrion |
图3 DlGDSL家族成员在龙眼体胚发生早期的FPKM值(A)聚类和部分成员在龙眼体胚发生早期的相对表达量(B ~ D) EC:胚性愈伤组织;ICpEC:不完全胚性紧实结构;GE:球形胚。
Fig. 3 FPKM values of members of DlGDSL family in the early somatic embryogenesis of longan(A)cluster and relative expression levels of some members of the DlGDSL family in the early somatic embryogenesis of longan(B-D) EC:Embryogenic callus;IcpEC:Incomplete embryogenic compact structure;GE:Globular embryo.
图4 DlGDSL家族部分成员在脱落酸(ABA)、茉莉酸甲酯(MeJA)、清水对照处理下的表达水平 不同小写字母表示同一处理不同时间差异显著(P < 0.05)。
Fig. 4 The expression levels of some members of the DlGDSL family under the treatment of abscisic acid(ABA),methyl jasmonate(MeJA),and water control Different lowercase letters indicate significant differences between different time of the same treatment(P < 0.05).
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