园艺学报 ›› 2021, Vol. 48 ›› Issue (7): 1282-1294.doi: 10.16420/j.issn.0513-353x.2021-0242
赵玉靖1, 卢银1, 冯大领1, 罗蕾1, 吴芳2, 杨锐1, 陈悦琦1, 孙晓雪1, 王彦华1, 陈雪平1, 申书兴1,**(), 罗双霞1,**(), 赵建军1,**()
收稿日期:
2021-04-27
修回日期:
2021-05-21
出版日期:
2021-07-25
发布日期:
2021-08-10
通讯作者:
申书兴,罗双霞,赵建军
E-mail:shensx@hebau.edu.cn;yylsx@hebau.edu.cn;jjz1971@aliyun.com
基金资助:
ZHAO Yujing1, LU Yin1, FENG Daling1, LUO Lei1, WU Fang2, YANG Rui1, CHEN Yueqi1, SUN Xiaoxue1, WANG Yanhua1, CHEN Xueping1, SHEN Shuxing1,**(), LUO Shuangxia1,**(), ZHAO Jianjun1,**()
Received:
2021-04-27
Revised:
2021-05-21
Online:
2021-07-25
Published:
2021-08-10
Contact:
SHEN Shuxing,LUO Shuangxia,ZHAO Jianjun
E-mail:shensx@hebau.edu.cn;yylsx@hebau.edu.cn;jjz1971@aliyun.com
摘要:
InDel背景选择标记有利于大白菜育种亲本的高效选配。以31份不同类型大白菜自交系为材料进行农艺性状变异分析、InDel标记遗传背景和群体结构分析,并将多态性标记与农艺性状相关联。结果显示,31个农艺性状的变异系数变幅为15.97% ~ 47.63%,平均为32.58%,表明供试群体表型变异丰富;从177对InDel引物中筛选出158对多态性引物,在31份材料中共检测出701个多态性等位变异位点,平均每对引物检测到等位变异位点4.418个,变幅为1 ~ 11个;标记位点的多态性信息含量(PIC)变幅为0.612 ~ 0.963,平均为0.843;有效等位基因变异数(Ne)变幅为1.656 ~ 3.985,平均为2.640;供试材料遗传相似系数(GS)在0.575 ~ 0.910之间,变化幅度较大,说明群体的遗传背景具有较大差异。群体结构分析将供试材料划分为3个亚群;关联分析发现分布于9个连锁群的22个InDel标记与供试材料的12个农艺性状(开展度、全株质量、球叶数、外叶数、叶片宽、叶片长、叶球高、叶球宽、叶球质量、中肋长、中心柱长和株高)相关。
中图分类号:
赵玉靖, 卢银, 冯大领, 罗蕾, 吴芳, 杨锐, 陈悦琦, 孙晓雪, 王彦华, 陈雪平, 申书兴, 罗双霞, 赵建军. 大白菜自交系背景选择InDel标记与重要农艺性状的关联分析[J]. 园艺学报, 2021, 48(7): 1282-1294.
ZHAO Yujing, LU Yin, FENG Daling, LUO Lei, WU Fang, YANG Rui, CHEN Yueqi, SUN Xiaoxue, WANG Yanhua, CHEN Xueping, SHEN Shuxing, LUO Shuangxia, ZHAO Jianjun. Association Analysis Between Background Selection InDel Markers and Important Agronomic Traits in Inbred Lines of Chinese Cabbage[J]. Acta Horticulturae Sinica, 2021, 48(7): 1282-1294.
编号 No. | 名称 Name | 类型 Type | 熟性 Maturity | 叶色 Leaf color |
---|---|---|---|---|
1 | B14Q-101 | 卵圆类型Oval type | 早熟Early maturity | 浅绿Light green |
2 | B17Q-432 | 卵圆类型Oval type | 晚熟Late maturity | 浅绿Light green |
3 | B14Q-109 | 卵圆类型Oval type | 中熟Middle maturity | 浅绿Light green |
4 | B14Q-113 | 卵圆类型Oval type | 早熟Early maturity | 浅绿Light green |
5 | B17Q-433 | 卵圆类型Oval type | 中晚熟Middle late maturity | 浅绿Light green |
6 | B14Q-124 | 卵圆类型Oval type | 中晚熟Middle late maturity | 浅绿Light green |
7 | B17Q-435 | 卵圆类型Oval type | 中熟Middle maturity | 浅绿Light green |
8 | B17Q-436 | 卵圆类型Oval type | 早熟Early maturity | 浅绿Light green |
9 | B17Q-437 | 卵圆类型Oval type | 中晚熟Middle late maturity | 浅绿Light green |
10 | B17Q-442 | 卵圆类型Oval type | 早熟Early maturity | 浅绿Light green |
11 | B17Q-441 | 直筒类型Straight tube type | 中晚熟Middle late maturity | 绿Green |
12 | B17Q-443 | 直筒类型Straight tube type | 晚熟Late maturity | 深绿Dark green |
13 | B17Q-444 | 直筒类型Straight tube type | 中晚熟Middle late maturity | 绿Green |
14 | B14Q-211 | 直筒类型Straight tube type | 中晚熟Middle late maturity | 绿Green |
15 | B17Q-447 | 直筒类型Straight tube type | 中熟Middle maturity | 深绿Dark green |
16 | B17Q-448 | 直筒类型Straight tube type | 中熟Middle maturity | 深绿Dark green |
17 | B14Q-209 | 平头类型Flat head type | 早熟Early maturity | 绿Green |
18 | B17Q-445 | 平头类型Flat head type | 早熟Early maturity | 绿Green |
19 | B17Q-446 | 平头类型Flat head type | 中熟Middle maturity | 绿Green |
20 | B14Q-141 | 平头类型Flat head type | 早熟Early maturity | 浅绿Light green |
21 | B17Q-439 | 平头类型Flat head type | 极早熟Very early maturity | 浅绿Light green |
22 | B17Q-450 | 平头类型Flat head type | 极早熟Very early maturity | 绿Green |
23 | B17Q-452 | 平头类型Flat head type | 早熟Early maturity | 浅绿Light green |
24 | B17Q-453 | 平头类型Flat head type | 早熟Early maturity | 绿Green |
25 | B14Q-260 | 花心变种Flower heart variety | 极早熟Very early maturity | 绿Green |
26 | B17Q-440 | 花心变种Flower heart variety | 极早熟Very early maturity | 黄绿Yellow green |
27 | B14Q-159 | 花心变种Flower heart variety | 中熟Middle maturity | 绿Green |
28 | B17Q-449 | 散叶变种Loose leaf variety | 晚熟Late maturity | 绿Green |
29 | B14Q-267 | 散叶变种Loose leaf variety | 早熟Early maturity | 绿Green |
30 | B14Q-279 | 散叶变种Loose leaf variety | 早熟Early maturity | 绿Green |
31 | B17Q-455 | 散叶变种Loose leaf variety | 早熟Early maturity | 深绿Dark green |
表1 供试大白菜的自交系信息
Table 1 Information of Chinese cabbage inbred lines
编号 No. | 名称 Name | 类型 Type | 熟性 Maturity | 叶色 Leaf color |
---|---|---|---|---|
1 | B14Q-101 | 卵圆类型Oval type | 早熟Early maturity | 浅绿Light green |
2 | B17Q-432 | 卵圆类型Oval type | 晚熟Late maturity | 浅绿Light green |
3 | B14Q-109 | 卵圆类型Oval type | 中熟Middle maturity | 浅绿Light green |
4 | B14Q-113 | 卵圆类型Oval type | 早熟Early maturity | 浅绿Light green |
5 | B17Q-433 | 卵圆类型Oval type | 中晚熟Middle late maturity | 浅绿Light green |
6 | B14Q-124 | 卵圆类型Oval type | 中晚熟Middle late maturity | 浅绿Light green |
7 | B17Q-435 | 卵圆类型Oval type | 中熟Middle maturity | 浅绿Light green |
8 | B17Q-436 | 卵圆类型Oval type | 早熟Early maturity | 浅绿Light green |
9 | B17Q-437 | 卵圆类型Oval type | 中晚熟Middle late maturity | 浅绿Light green |
10 | B17Q-442 | 卵圆类型Oval type | 早熟Early maturity | 浅绿Light green |
11 | B17Q-441 | 直筒类型Straight tube type | 中晚熟Middle late maturity | 绿Green |
12 | B17Q-443 | 直筒类型Straight tube type | 晚熟Late maturity | 深绿Dark green |
13 | B17Q-444 | 直筒类型Straight tube type | 中晚熟Middle late maturity | 绿Green |
14 | B14Q-211 | 直筒类型Straight tube type | 中晚熟Middle late maturity | 绿Green |
15 | B17Q-447 | 直筒类型Straight tube type | 中熟Middle maturity | 深绿Dark green |
16 | B17Q-448 | 直筒类型Straight tube type | 中熟Middle maturity | 深绿Dark green |
17 | B14Q-209 | 平头类型Flat head type | 早熟Early maturity | 绿Green |
18 | B17Q-445 | 平头类型Flat head type | 早熟Early maturity | 绿Green |
19 | B17Q-446 | 平头类型Flat head type | 中熟Middle maturity | 绿Green |
20 | B14Q-141 | 平头类型Flat head type | 早熟Early maturity | 浅绿Light green |
21 | B17Q-439 | 平头类型Flat head type | 极早熟Very early maturity | 浅绿Light green |
22 | B17Q-450 | 平头类型Flat head type | 极早熟Very early maturity | 绿Green |
23 | B17Q-452 | 平头类型Flat head type | 早熟Early maturity | 浅绿Light green |
24 | B17Q-453 | 平头类型Flat head type | 早熟Early maturity | 绿Green |
25 | B14Q-260 | 花心变种Flower heart variety | 极早熟Very early maturity | 绿Green |
26 | B17Q-440 | 花心变种Flower heart variety | 极早熟Very early maturity | 黄绿Yellow green |
27 | B14Q-159 | 花心变种Flower heart variety | 中熟Middle maturity | 绿Green |
28 | B17Q-449 | 散叶变种Loose leaf variety | 晚熟Late maturity | 绿Green |
29 | B14Q-267 | 散叶变种Loose leaf variety | 早熟Early maturity | 绿Green |
30 | B14Q-279 | 散叶变种Loose leaf variety | 早熟Early maturity | 绿Green |
31 | B17Q-455 | 散叶变种Loose leaf variety | 早熟Early maturity | 深绿Dark green |
染色体 Chromosome | InDel数 InDel number | 基因组物理位置/bp Genomic physical location | 扩增片段大小/bp Amplified fragment size |
---|---|---|---|
A01 | 20 | 1 214 145 ~ 25 476 244 | 80 ~ 160 |
A02 | 14 | 519 753 ~ 26 721 576 | 88 ~ 160 |
A03 | 18 | 1 103 584 ~ 30 532 716 | 91 ~ 160 |
A04 | 15 | 180 352 ~ 19 056 973 | 100 ~ 158 |
A05 | 22 | 1 631 177 ~ 23 981 249 | 96 ~ 156 |
A06 | 22 | 1 820 ~ 25 083 208 | 92 ~ 160 |
A07 | 21 | 166 456 ~ 25 516 427 | 83 ~ 160 |
A08 | 12 | 1 020 793 ~ 20 443 351 | 86 ~ 159 |
A09 | 23 | 228 941 ~ 38 012 377 | 93 ~ 159 |
A10 | 10 | 1 108 151 ~ 14 947 251 | 94 ~ 160 |
表2 InDel分子标记分布
Table 2 Distribution of InDel molecular markers
染色体 Chromosome | InDel数 InDel number | 基因组物理位置/bp Genomic physical location | 扩增片段大小/bp Amplified fragment size |
---|---|---|---|
A01 | 20 | 1 214 145 ~ 25 476 244 | 80 ~ 160 |
A02 | 14 | 519 753 ~ 26 721 576 | 88 ~ 160 |
A03 | 18 | 1 103 584 ~ 30 532 716 | 91 ~ 160 |
A04 | 15 | 180 352 ~ 19 056 973 | 100 ~ 158 |
A05 | 22 | 1 631 177 ~ 23 981 249 | 96 ~ 156 |
A06 | 22 | 1 820 ~ 25 083 208 | 92 ~ 160 |
A07 | 21 | 166 456 ~ 25 516 427 | 83 ~ 160 |
A08 | 12 | 1 020 793 ~ 20 443 351 | 86 ~ 159 |
A09 | 23 | 228 941 ~ 38 012 377 | 93 ~ 159 |
A10 | 10 | 1 108 151 ~ 14 947 251 | 94 ~ 160 |
性状类型 Character type | 性状 Trait | 最小值Minimum | 最大值Maximum | 极差Range | 平均值Mean | 标准差Deviation | 变异系数/% Coefficient of variation | H’ | J |
---|---|---|---|---|---|---|---|---|---|
连续性性状 Continuous traits | 株高Plant height | 17.33 | 56.50 | 39.17 | 37.88 | 10.77 | 28.44 | 1.961 | 0.943 |
开展度Expansion diameter | 41.50 | 83.67 | 42.17 | 62.47 | 12.14 | 19.44 | 2.038 | 0.927 | |
叶片长Leaf length | 24.00 | 58.00 | 34.00 | 40.03 | 9.19 | 22.95 | 2.156 | 0.937 | |
叶片宽Leaf width | 16.50 | 37.33 | 20.83 | 25.25 | 4.69 | 18.56 | 1.897 | 0.912 | |
中肋厚Middle rib thickness | 0.65 | 1.20 | 0.55 | 0.92 | 0.15 | 15.97 | 1.794 | 0.922 | |
中肋长Middle rib length | 10.00 | 36.33 | 26.33 | 21.98 | 7.12 | 32.40 | 2.238 | 0.972 | |
中肋宽Middle rib width | 4.00 | 8.00 | 4.00 | 5.94 | 0.98 | 16.57 | 1.965 | 0.895 | |
外叶数Outer leaf number | 6.00 | 17.50 | 11.50 | 10.72 | 3.30 | 30.74 | 1.634 | 0.912 | |
叶球高Height of leaf head | 13.00 | 53.00 | 40.00 | 32.96 | 10.67 | 32.38 | 1.965 | 0.945 | |
叶球宽Leaf head width | 12.00 | 31.50 | 19.50 | 20.57 | 5.22 | 25.38 | 2.035 | 0.926 | |
球叶数Heading leaf number | 21.50 | 56.00 | 34.50 | 37.81 | 8.56 | 22.65 | 2.093 | 0.909 | |
间断性性状 Discrete traits | 叶球质量Leaf head weight | 0.55 | 3.50 | 2.95 | 1.88 | 0.81 | 42.81 | 2.139 | 0.929 |
中心柱长Central column length | 1.50 | 6.50 | 5.00 | 4.01 | 1.36 | 33.97 | 2.173 | 0.906 | |
全株质量Whole plant weight | 0.60 | 4.25 | 3.65 | 2.52 | 1.10 | 43.57 | 2.044 | 0.983 | |
叶色Leaf color | 1 | 5 | 4 | 2.77 | 1.04 | 37.59 | 1.111 | 0.801 | |
性状类型 Character type | 性状 Trait | 最小值Minimum | 最大值Maximum | 极差Range | 平均值Mean | 标准差Deviation | 变异系数/% Coefficient of variation | H’ | J |
间断性性状 Discrete traits | 叶片光泽Leaf luster | 1 | 2 | 1 | 1.13 | 0.35 | 30.51 | 0.393 | 0.567 |
叶缘波状Leaf margin undulate | 1 | 4 | 3 | 3.27 | 0.83 | 25.34 | 1.106 | 0.798 | |
叶缘锯齿Leaf margin serrate | 1 | 4 | 3 | 2.53 | 1.14 | 44.87 | 1.134 | 0.818 | |
茸毛Pubescence | 1 | 3 | 2 | 2.13 | 0.97 | 45.62 | 0.882 | 0.803 | |
叶脉鲜明度Vein freshness | 1 | 2 | 1 | 1.90 | 0.31 | 16.06 | 0.325 | 0.469 | |
株形Plant shape | 1 | 2 | 1 | 1.33 | 0.48 | 35.96 | 0.637 | 0.918 | |
叶形Leaf shape | 1 | 5 | 4 | 3.33 | 1.09 | 32.80 | 1.327 | 0.825 | |
中肋色Middle rib color | 1 | 4 | 3 | 2.60 | 0.93 | 35.85 | 1.189 | 0.857 | |
中肋形状Middle rib shape | 1 | 2 | 1 | 1.63 | 0.49 | 30.01 | 0.657 | 0.948 | |
叶球形状Leaf head shape | 1 | 5 | 4 | 2.77 | 1.17 | 42.11 | 1.495 | 0.929 | |
抱合方式Embracing mode | 1 | 4 | 3 | 2.80 | 1.27 | 45.37 | 1.089 | 0.991 | |
球顶部形状Top shape of leaf head | 1 | 3 | 2 | 1.93 | 0.83 | 42.81 | 1.095 | 0.997 | |
叶球颜色Leaf head color | 1 | 4 | 3 | 3.07 | 0.74 | 24.12 | 0.904 | 0.652 | |
叶球内叶颜色 Inner leaf color of leaf head | 1 | 3 | 2 | 1.53 | 0.73 | 47.63 | 0.912 | 0.830 | |
中心柱形状Center column shape | 1 | 4 | 3 | 2.70 | 1.15 | 42.56 | 1.301 | 0.939 | |
熟性Maturity | 1 | 5 | 4 | 2.73 | 1.23 | 45.00 | 1.486 | 0.923 |
表3 大白菜农艺性状统计分析
Table 3 Statistical analysis of agronomic traits of Chinese cabbage
性状类型 Character type | 性状 Trait | 最小值Minimum | 最大值Maximum | 极差Range | 平均值Mean | 标准差Deviation | 变异系数/% Coefficient of variation | H’ | J |
---|---|---|---|---|---|---|---|---|---|
连续性性状 Continuous traits | 株高Plant height | 17.33 | 56.50 | 39.17 | 37.88 | 10.77 | 28.44 | 1.961 | 0.943 |
开展度Expansion diameter | 41.50 | 83.67 | 42.17 | 62.47 | 12.14 | 19.44 | 2.038 | 0.927 | |
叶片长Leaf length | 24.00 | 58.00 | 34.00 | 40.03 | 9.19 | 22.95 | 2.156 | 0.937 | |
叶片宽Leaf width | 16.50 | 37.33 | 20.83 | 25.25 | 4.69 | 18.56 | 1.897 | 0.912 | |
中肋厚Middle rib thickness | 0.65 | 1.20 | 0.55 | 0.92 | 0.15 | 15.97 | 1.794 | 0.922 | |
中肋长Middle rib length | 10.00 | 36.33 | 26.33 | 21.98 | 7.12 | 32.40 | 2.238 | 0.972 | |
中肋宽Middle rib width | 4.00 | 8.00 | 4.00 | 5.94 | 0.98 | 16.57 | 1.965 | 0.895 | |
外叶数Outer leaf number | 6.00 | 17.50 | 11.50 | 10.72 | 3.30 | 30.74 | 1.634 | 0.912 | |
叶球高Height of leaf head | 13.00 | 53.00 | 40.00 | 32.96 | 10.67 | 32.38 | 1.965 | 0.945 | |
叶球宽Leaf head width | 12.00 | 31.50 | 19.50 | 20.57 | 5.22 | 25.38 | 2.035 | 0.926 | |
球叶数Heading leaf number | 21.50 | 56.00 | 34.50 | 37.81 | 8.56 | 22.65 | 2.093 | 0.909 | |
间断性性状 Discrete traits | 叶球质量Leaf head weight | 0.55 | 3.50 | 2.95 | 1.88 | 0.81 | 42.81 | 2.139 | 0.929 |
中心柱长Central column length | 1.50 | 6.50 | 5.00 | 4.01 | 1.36 | 33.97 | 2.173 | 0.906 | |
全株质量Whole plant weight | 0.60 | 4.25 | 3.65 | 2.52 | 1.10 | 43.57 | 2.044 | 0.983 | |
叶色Leaf color | 1 | 5 | 4 | 2.77 | 1.04 | 37.59 | 1.111 | 0.801 | |
性状类型 Character type | 性状 Trait | 最小值Minimum | 最大值Maximum | 极差Range | 平均值Mean | 标准差Deviation | 变异系数/% Coefficient of variation | H’ | J |
间断性性状 Discrete traits | 叶片光泽Leaf luster | 1 | 2 | 1 | 1.13 | 0.35 | 30.51 | 0.393 | 0.567 |
叶缘波状Leaf margin undulate | 1 | 4 | 3 | 3.27 | 0.83 | 25.34 | 1.106 | 0.798 | |
叶缘锯齿Leaf margin serrate | 1 | 4 | 3 | 2.53 | 1.14 | 44.87 | 1.134 | 0.818 | |
茸毛Pubescence | 1 | 3 | 2 | 2.13 | 0.97 | 45.62 | 0.882 | 0.803 | |
叶脉鲜明度Vein freshness | 1 | 2 | 1 | 1.90 | 0.31 | 16.06 | 0.325 | 0.469 | |
株形Plant shape | 1 | 2 | 1 | 1.33 | 0.48 | 35.96 | 0.637 | 0.918 | |
叶形Leaf shape | 1 | 5 | 4 | 3.33 | 1.09 | 32.80 | 1.327 | 0.825 | |
中肋色Middle rib color | 1 | 4 | 3 | 2.60 | 0.93 | 35.85 | 1.189 | 0.857 | |
中肋形状Middle rib shape | 1 | 2 | 1 | 1.63 | 0.49 | 30.01 | 0.657 | 0.948 | |
叶球形状Leaf head shape | 1 | 5 | 4 | 2.77 | 1.17 | 42.11 | 1.495 | 0.929 | |
抱合方式Embracing mode | 1 | 4 | 3 | 2.80 | 1.27 | 45.37 | 1.089 | 0.991 | |
球顶部形状Top shape of leaf head | 1 | 3 | 2 | 1.93 | 0.83 | 42.81 | 1.095 | 0.997 | |
叶球颜色Leaf head color | 1 | 4 | 3 | 3.07 | 0.74 | 24.12 | 0.904 | 0.652 | |
叶球内叶颜色 Inner leaf color of leaf head | 1 | 3 | 2 | 1.53 | 0.73 | 47.63 | 0.912 | 0.830 | |
中心柱形状Center column shape | 1 | 4 | 3 | 2.70 | 1.15 | 42.56 | 1.301 | 0.939 | |
熟性Maturity | 1 | 5 | 4 | 2.73 | 1.23 | 45.00 | 1.486 | 0.923 |
自交系Inbred line | 特征引物Specific primer | 自交系Inbred line | 特征引物Specific primer |
---|---|---|---|
B14Q-101 | A10-3 | B17Q-442 | A01-5 |
B14Q-109 | A10-3 | B17Q-444 | A10-8 |
B14Q-209 | A09-14、09-15 | B17Q-446 | A01-17、A02-3、A02-14、A03-2、A04-8、A05-1、A05-17、A06-5、A06-7、A06-8、A06-9、A07-4、A07-5、A07-7、A07-11、A09-3、A09-6、A09-9 |
B14Q-260 | A04-10、A05-7 | B17Q-448 | A01-10 |
B14Q-279 | A02-11、A06-4、A06-6、A06-18、A07-13、A09-10 | B17Q-449 | A07-12 |
B17Q-439 | A07-6 | B17Q-455 | A05-1、A05-10、A07-6、A09-3、A09-17 |
B17Q-441 | A10-3 |
表4 具有特征引物的材料
Table 4 Materials with specific primers
自交系Inbred line | 特征引物Specific primer | 自交系Inbred line | 特征引物Specific primer |
---|---|---|---|
B14Q-101 | A10-3 | B17Q-442 | A01-5 |
B14Q-109 | A10-3 | B17Q-444 | A10-8 |
B14Q-209 | A09-14、09-15 | B17Q-446 | A01-17、A02-3、A02-14、A03-2、A04-8、A05-1、A05-17、A06-5、A06-7、A06-8、A06-9、A07-4、A07-5、A07-7、A07-11、A09-3、A09-6、A09-9 |
B14Q-260 | A04-10、A05-7 | B17Q-448 | A01-10 |
B14Q-279 | A02-11、A06-4、A06-6、A06-18、A07-13、A09-10 | B17Q-449 | A07-12 |
B17Q-439 | A07-6 | B17Q-455 | A05-1、A05-10、A07-6、A09-3、A09-17 |
B17Q-441 | A10-3 |
序号 No. | 材料编号 Code | 遗传相似系数 GS coefficient | 序号 No. | 材料编号 Code | 遗传相似系数 GS coefficient | ||||
---|---|---|---|---|---|---|---|---|---|
平均值 Average | 最大值 Max | 最小值 Min | 平均值 Average | 最大值 Max | 最小值 Min | ||||
1 | B14Q-101 | 0.688 | 0.750 (B17Q-440) | 0.609 (B14Q-279) | 17 | B17Q-444 | 0.709 | 0.765 (B17Q-447) | 0.656 (B17Q-432) |
2 | B17Q-432 | 0.712 | 0.781 (B17Q-442) | 0.634 (B17Q-446) | 18 | B14Q-209 | 0.663 | 0.854 (B14Q-113) | 0.575 (B17Q-446) |
3 | B14Q-109 | 0.682 | 0.785 (B14Q-113) | 0.616 (B17Q-455) | 19 | B14Q-211 | 0.718 | 0.859 (B17Q-441) | 0.647 (B17Q-435) |
4 | B14Q-113 | 0.699 | 0.854 (B14Q-209) | 0.598 (B17Q-446) | 20 | B17Q-445 | 0.713 | 0.796 (B14Q-211) | 0.620 (B14Q-267) |
5 | B17Q-433 | 0.693 | 0.738 (B17Q-442) | 0.619 (B17Q-446) | 21 | B17Q-446 | 0.671 | 0.760 (B14Q-141) | 0.575 (B14Q-209) |
6 | B14Q-124 | 0.708 | 0.792 (B17Q-450) | 0.625 (B14Q-209) | 22 | B17Q-447 | 0.716 | 0.844 (B17Q-442) | 0.620 (B17Q-453) |
7 | B17Q-435 | 0.680 | 0.752 (B17Q-432) | 0.630 (B14Q-260) | 23 | B17Q-448 | 0.721 | 0.775 (B17Q-442) | 0.656 (B17Q-446) |
8 | B17Q-436 | 0.707 | 0.768 (B14Q-141) | 0.661 (B17Q-455) | 24 | B17Q-449 | 0.681 | 0.740 (B17Q-452) | 0.597 (B14Q-209) |
9 | B17Q-437 | 0.686 | 0.804 (B14Q-141) | 0.615 (B14Q-209) | 25 | B17Q-450 | 0.732 | 0.910 (B17Q-439) | 0.606 (B14Q-209) |
10 | B14Q-141 | 0.740 | 0.872 (B17Q-439) | 0.621 (B14Q-209) | 26 | B14Q-260 | 0.701 | 0.779 (B17Q-450) | 0.590 (B14Q-209) |
11 | B17Q-439 | 0.735 | 0.910 (B17Q-450) | 0.605 (B14Q-209) | 27 | B17Q-452 | 0.681 | 0.740 (B17Q-449) | 0.614 (B14Q-209) |
12 | B17Q-440 | 0.703 | 0.778 (B14Q-159) | 0.624 (B14Q-279) | 28 | B14Q-267 | 0.661 | 0.715 (B17Q-432) | 0.608 (B17Q-446) |
13 | B14Q-159 | 0.702 | 0.778 (B17Q-440) | 0.650 (B17Q-435) | 29 | B17Q-453 | 0.685 | 0.729 (B14Q-159) | 0.620 (B17Q-447) |
14 | B17Q-441 | 0.717 | 0.859 (B14Q-211) | 0.638 (B17Q-452) | 30 | B14Q-279 | 0.672 | 0.739 (B17Q-455) | 0.609 (B14Q-101) |
15 | B17Q-442 | 0.742 | 0.844 (B17Q-447) | 0.676 (B14Q-209) | 31 | B17Q-455 | 0.688 | 0.758 (B17Q-444) | 0.616 (B14Q-109) |
16 | B17Q-443 | 0.704 | 0.760 (B17Q-445) | 0.640 (B14Q-267) | 平均 Mean | 0.700 |
表5 供试材料遗传相似系数
Table 5 Genetic similarity coefficient of tested materials
序号 No. | 材料编号 Code | 遗传相似系数 GS coefficient | 序号 No. | 材料编号 Code | 遗传相似系数 GS coefficient | ||||
---|---|---|---|---|---|---|---|---|---|
平均值 Average | 最大值 Max | 最小值 Min | 平均值 Average | 最大值 Max | 最小值 Min | ||||
1 | B14Q-101 | 0.688 | 0.750 (B17Q-440) | 0.609 (B14Q-279) | 17 | B17Q-444 | 0.709 | 0.765 (B17Q-447) | 0.656 (B17Q-432) |
2 | B17Q-432 | 0.712 | 0.781 (B17Q-442) | 0.634 (B17Q-446) | 18 | B14Q-209 | 0.663 | 0.854 (B14Q-113) | 0.575 (B17Q-446) |
3 | B14Q-109 | 0.682 | 0.785 (B14Q-113) | 0.616 (B17Q-455) | 19 | B14Q-211 | 0.718 | 0.859 (B17Q-441) | 0.647 (B17Q-435) |
4 | B14Q-113 | 0.699 | 0.854 (B14Q-209) | 0.598 (B17Q-446) | 20 | B17Q-445 | 0.713 | 0.796 (B14Q-211) | 0.620 (B14Q-267) |
5 | B17Q-433 | 0.693 | 0.738 (B17Q-442) | 0.619 (B17Q-446) | 21 | B17Q-446 | 0.671 | 0.760 (B14Q-141) | 0.575 (B14Q-209) |
6 | B14Q-124 | 0.708 | 0.792 (B17Q-450) | 0.625 (B14Q-209) | 22 | B17Q-447 | 0.716 | 0.844 (B17Q-442) | 0.620 (B17Q-453) |
7 | B17Q-435 | 0.680 | 0.752 (B17Q-432) | 0.630 (B14Q-260) | 23 | B17Q-448 | 0.721 | 0.775 (B17Q-442) | 0.656 (B17Q-446) |
8 | B17Q-436 | 0.707 | 0.768 (B14Q-141) | 0.661 (B17Q-455) | 24 | B17Q-449 | 0.681 | 0.740 (B17Q-452) | 0.597 (B14Q-209) |
9 | B17Q-437 | 0.686 | 0.804 (B14Q-141) | 0.615 (B14Q-209) | 25 | B17Q-450 | 0.732 | 0.910 (B17Q-439) | 0.606 (B14Q-209) |
10 | B14Q-141 | 0.740 | 0.872 (B17Q-439) | 0.621 (B14Q-209) | 26 | B14Q-260 | 0.701 | 0.779 (B17Q-450) | 0.590 (B14Q-209) |
11 | B17Q-439 | 0.735 | 0.910 (B17Q-450) | 0.605 (B14Q-209) | 27 | B17Q-452 | 0.681 | 0.740 (B17Q-449) | 0.614 (B14Q-209) |
12 | B17Q-440 | 0.703 | 0.778 (B14Q-159) | 0.624 (B14Q-279) | 28 | B14Q-267 | 0.661 | 0.715 (B17Q-432) | 0.608 (B17Q-446) |
13 | B14Q-159 | 0.702 | 0.778 (B17Q-440) | 0.650 (B17Q-435) | 29 | B17Q-453 | 0.685 | 0.729 (B14Q-159) | 0.620 (B17Q-447) |
14 | B17Q-441 | 0.717 | 0.859 (B14Q-211) | 0.638 (B17Q-452) | 30 | B14Q-279 | 0.672 | 0.739 (B17Q-455) | 0.609 (B14Q-101) |
15 | B17Q-442 | 0.742 | 0.844 (B17Q-447) | 0.676 (B14Q-209) | 31 | B17Q-455 | 0.688 | 0.758 (B17Q-444) | 0.616 (B14Q-109) |
16 | B17Q-443 | 0.704 | 0.760 (B17Q-445) | 0.640 (B14Q-267) | 平均 Mean | 0.700 |
变种 Variety | 生态型Ecological type | 自交系份数 No. of inbred lines | 平均遗传相似系数 Average of GS |
---|---|---|---|
结球大白菜 Chinese cabbage | 卵圆类型Oval type | 10 | 0.700 |
平头类型Flat head | 8 | 0.703 | |
直筒类型Straight tube type | 6 | 0.714 | |
花心大白菜 Flower heart Chinese cabbage | 3 | 0.702 | |
散叶大白菜 Loose leaf Chinese cabbage | 4 | 0.676 | |
平均Average | 0.699 |
表6 大白菜变种及生态型自交系与其他变种或生态型之间的遗传多样性
Table 6 Genetic diversity between Chinese cabbage varieties and ecotype inbred lines and other varieties or ecotypes
变种 Variety | 生态型Ecological type | 自交系份数 No. of inbred lines | 平均遗传相似系数 Average of GS |
---|---|---|---|
结球大白菜 Chinese cabbage | 卵圆类型Oval type | 10 | 0.700 |
平头类型Flat head | 8 | 0.703 | |
直筒类型Straight tube type | 6 | 0.714 | |
花心大白菜 Flower heart Chinese cabbage | 3 | 0.702 | |
散叶大白菜 Loose leaf Chinese cabbage | 4 | 0.676 | |
平均Average | 0.699 |
图2 31份大白菜自交系(1 ~ 31)的群体结构 不同种质材料编号同表1;不同色块对应3种不同成分。
Fig. 2 Population structure of 31 Chinese cabbage inbred lines(1-31) The abscissa number is the same as the material number in Table 1,representing different germplasm. Different color blocks correspond to three different components.
引物编号 Primer ID | 位置 Position | 正向引物序列 Forward primer | 反向引物序列 Reverse primer | 产物大小/bp Product size |
---|---|---|---|---|
A01-19 | 24837737 | AGAGAGAAGACCCATAAGCC | CACGAAGTCGAGAGGAAATA | 110 |
A02-9 | 21774955 | CTCCAGAGACAACTTTCAGC | TCACTTGTAATCCTTGAGCA | 103 |
A03-5 | 4727108 | ACCGTTTGCCATTATATACG | TCATTCTCTCCAATCACACA | 91 |
A05-6 | 6340979 | ACGTCGTCGTATTGAACTCT | TGCTTCTTCTGGAGTGTCTT | 143 |
A05-14 | 16436310 | CCTGCACATTATCCATCTTT | AATGACCCAGTAGATCAGGT | 156 |
A05-16 | 18659064 | GGGACAACTCAATTACACCT | ACACCACCGTCTCAGAATAC | 126 |
A06-12 | 16861849 | TCCTTTTCTTTGAAGTGTGG | GAACAATCACCACTAAACCC | 154 |
A06-13 | 18292827 | GGACCAGTTATCGTTTTGTC | CATAAGAAAAACTATCCGGC | 92 |
A06-15 | 19392228 | ACAAATCTGAACAACGAAGG | ACAAATAGATCGCGATAAGG | 105 |
A07-5 | 4537468 | GCTAGTCCACAGCAAATGAT | TTGGCTTCTTCTTCACTGAT | 135 |
A07-13 | 16364142 | GGGAAGCAATCTAACAGAAA | GGTGTAGACATGTTTCAAAGG | 148 |
A07-14 | 17219194 | CCTGAAGCAAGAAGTGCTAT | TTTCTGCTACGGGTAAGTTG | 149 |
A07-16 | 20894341 | CCACATGTAGTCACTGCAAC | AAGATGCTCAAGAAGTGCTC | 136 |
A07-18 | 22027474 | GTGAATGTAGACGACACACG | AATCTTCAAGCTTTCACTCG | 149 |
A09-3 | 1283777 | CTCCCACTTTTGAAGTTCTG | TGATATTTTCGATGACCTGG | 129 |
A09-7 | 12459199 | CGTTCTTCAGTGTGATTCAA | TATGAGTTAACACCCCTTGG | 121 |
A09-8 | 16434839 | TGTTAGATACTCCTCCACTCA | TGTCTCTCAACAACTTCGAG | 108 |
A09-9 | 21909939 | CTATGAACCATCCCAAAGAA | CAGCTTAATTTGCAACATCC | 136 |
A10-3 | 3030502 | AACATGATGCTGATAGGTCC | CTCTTTGATTTGAAGAGTGACC | 101 |
A10-4 | 3775136 | CAGCTCTCTCTCTTCAGTGG | CTATTAACCGTGGATTGGTC | 145 |
A10-7 | 11696916 | TTCTAATTTGTGCAGAGTCC | AACTTTGTCTGCGTGATGAT | 130 |
A10-10 | 14947251 | AAACAAAACAGGAAGTGGTG | AGAGATATTGAGGCCCATTT | 133 |
表7 InDel引物序列信息
Table 7 InDel primer sequence information
引物编号 Primer ID | 位置 Position | 正向引物序列 Forward primer | 反向引物序列 Reverse primer | 产物大小/bp Product size |
---|---|---|---|---|
A01-19 | 24837737 | AGAGAGAAGACCCATAAGCC | CACGAAGTCGAGAGGAAATA | 110 |
A02-9 | 21774955 | CTCCAGAGACAACTTTCAGC | TCACTTGTAATCCTTGAGCA | 103 |
A03-5 | 4727108 | ACCGTTTGCCATTATATACG | TCATTCTCTCCAATCACACA | 91 |
A05-6 | 6340979 | ACGTCGTCGTATTGAACTCT | TGCTTCTTCTGGAGTGTCTT | 143 |
A05-14 | 16436310 | CCTGCACATTATCCATCTTT | AATGACCCAGTAGATCAGGT | 156 |
A05-16 | 18659064 | GGGACAACTCAATTACACCT | ACACCACCGTCTCAGAATAC | 126 |
A06-12 | 16861849 | TCCTTTTCTTTGAAGTGTGG | GAACAATCACCACTAAACCC | 154 |
A06-13 | 18292827 | GGACCAGTTATCGTTTTGTC | CATAAGAAAAACTATCCGGC | 92 |
A06-15 | 19392228 | ACAAATCTGAACAACGAAGG | ACAAATAGATCGCGATAAGG | 105 |
A07-5 | 4537468 | GCTAGTCCACAGCAAATGAT | TTGGCTTCTTCTTCACTGAT | 135 |
A07-13 | 16364142 | GGGAAGCAATCTAACAGAAA | GGTGTAGACATGTTTCAAAGG | 148 |
A07-14 | 17219194 | CCTGAAGCAAGAAGTGCTAT | TTTCTGCTACGGGTAAGTTG | 149 |
A07-16 | 20894341 | CCACATGTAGTCACTGCAAC | AAGATGCTCAAGAAGTGCTC | 136 |
A07-18 | 22027474 | GTGAATGTAGACGACACACG | AATCTTCAAGCTTTCACTCG | 149 |
A09-3 | 1283777 | CTCCCACTTTTGAAGTTCTG | TGATATTTTCGATGACCTGG | 129 |
A09-7 | 12459199 | CGTTCTTCAGTGTGATTCAA | TATGAGTTAACACCCCTTGG | 121 |
A09-8 | 16434839 | TGTTAGATACTCCTCCACTCA | TGTCTCTCAACAACTTCGAG | 108 |
A09-9 | 21909939 | CTATGAACCATCCCAAAGAA | CAGCTTAATTTGCAACATCC | 136 |
A10-3 | 3030502 | AACATGATGCTGATAGGTCC | CTCTTTGATTTGAAGAGTGACC | 101 |
A10-4 | 3775136 | CAGCTCTCTCTCTTCAGTGG | CTATTAACCGTGGATTGGTC | 145 |
A10-7 | 11696916 | TTCTAATTTGTGCAGAGTCC | AACTTTGTCTGCGTGATGAT | 130 |
A10-10 | 14947251 | AAACAAAACAGGAAGTGGTG | AGAGATATTGAGGCCCATTT | 133 |
引物编号 Primer ID | 关联性状 associated traits | 引物编号 Primer ID | 关联性状 associated traits |
---|---|---|---|
A01-19 | 全株质量、叶球质量 Whole plant weight,leaf head weight | A07-14 | 叶片长、叶球高、中肋长、株高 Leaf length,leaf head height,middle rib length,plant height |
A02-9 | 叶片宽Leaf width | A07-16 | 叶片宽Leaf width |
A03-5 | 全株质量、叶球质量 Whole plant weight,leaf head weight | A07-18 | 叶片宽Leaf width |
A05-6 | 叶片长Leaf length | A09-3 | 叶片长、叶球高、中肋长、株高 Leaf length,leaf head height,middle rib length,plant height |
A05-14 | 中肋长、株高 Middle rib length,plant height | A09-7 | 叶片长Leaf length |
A05-16 | 外叶数Outer leaf number | A09-8 | 球叶数Heading leaf number |
A06-12 | 开展度、叶片宽 Expansion diameter,leaf width | A09-9 | 全株质量、叶球宽、叶球质量 Whole plant weight,leaf head width,leaf head weight |
A06-13 | 叶球高、株高 Leaf head height,plant height | A10-3 | 全株质量Whole plant weight |
A06-15 | 叶球高Leaf head height | A10-4 | 中心柱长Central column length |
A07-5 | 叶球高Leaf head height | A10-7 | 全株质量、外叶数、叶球宽度、叶球质量 Whole plant weight,outer leaf number,leaf head width,leaf head weight |
A07-13 | 叶球宽Leaf head width | A10-10 | 叶球宽Leaf head width |
表8 InDel标记及关联性状
Table 8 InDel Markers and associated traits
引物编号 Primer ID | 关联性状 associated traits | 引物编号 Primer ID | 关联性状 associated traits |
---|---|---|---|
A01-19 | 全株质量、叶球质量 Whole plant weight,leaf head weight | A07-14 | 叶片长、叶球高、中肋长、株高 Leaf length,leaf head height,middle rib length,plant height |
A02-9 | 叶片宽Leaf width | A07-16 | 叶片宽Leaf width |
A03-5 | 全株质量、叶球质量 Whole plant weight,leaf head weight | A07-18 | 叶片宽Leaf width |
A05-6 | 叶片长Leaf length | A09-3 | 叶片长、叶球高、中肋长、株高 Leaf length,leaf head height,middle rib length,plant height |
A05-14 | 中肋长、株高 Middle rib length,plant height | A09-7 | 叶片长Leaf length |
A05-16 | 外叶数Outer leaf number | A09-8 | 球叶数Heading leaf number |
A06-12 | 开展度、叶片宽 Expansion diameter,leaf width | A09-9 | 全株质量、叶球宽、叶球质量 Whole plant weight,leaf head width,leaf head weight |
A06-13 | 叶球高、株高 Leaf head height,plant height | A10-3 | 全株质量Whole plant weight |
A06-15 | 叶球高Leaf head height | A10-4 | 中心柱长Central column length |
A07-5 | 叶球高Leaf head height | A10-7 | 全株质量、外叶数、叶球宽度、叶球质量 Whole plant weight,outer leaf number,leaf head width,leaf head weight |
A07-13 | 叶球宽Leaf head width | A10-10 | 叶球宽Leaf head width |
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