https://www.ahs.ac.cn/images/0513-353X/images/top-banner1.jpg|#|苹果
https://www.ahs.ac.cn/images/0513-353X/images/top-banner2.jpg|#|甘蓝
https://www.ahs.ac.cn/images/0513-353X/images/top-banner3.jpg|#|菊花
https://www.ahs.ac.cn/images/0513-353X/images/top-banner4.jpg|#|灵芝
https://www.ahs.ac.cn/images/0513-353X/images/top-banner5.jpg|#|桃
https://www.ahs.ac.cn/images/0513-353X/images/top-banner6.jpg|#|黄瓜
https://www.ahs.ac.cn/images/0513-353X/images/top-banner7.jpg|#|蝴蝶兰
https://www.ahs.ac.cn/images/0513-353X/images/top-banner8.jpg|#|樱桃
https://www.ahs.ac.cn/images/0513-353X/images/top-banner9.jpg|#|观赏荷花
https://www.ahs.ac.cn/images/0513-353X/images/top-banner10.jpg|#|菊花
https://www.ahs.ac.cn/images/0513-353X/images/top-banner11.jpg|#|月季
https://www.ahs.ac.cn/images/0513-353X/images/top-banner12.jpg|#|菊花

园艺学报 ›› 2020, Vol. 47 ›› Issue (11): 2095-2106.doi: 10.16420/j.issn.0513-353x.2020-0570

• 研究论文 • 上一篇    下一篇

柑橘MAPK基因的生物信息及其响应溃疡病菌侵染的表达分析

龙 琴,谢 宇,雷天刚,何永睿,许兰珍,邹修平*,陈善春*   

  1. 西南大学/中国农业科学院柑桔研究所,国家柑桔工程技术研究中心,重庆 400712
  • 出版日期:2020-11-25 发布日期:2020-12-07
  • 基金资助:
    国家重点研发计划项目(2018YFD1000300);重庆市自然科学基金—博士后基金项目(cstc2019jcyj-bshX0024);中央高校基本科研业务费项目(XDJK2018B016,XDJK2019C027);国家现代农业产业技术体系建设专项资金项目(CARS-26)

Bioinformatics Analysis of MAPK Genes in Citrus and Their Expression in Response to Canker Disease

LONG Qin,XIE Yu,LEI Tiangang,HE Yongrui,XU Lanzhen,ZOU Xiuping*,and CHEN Shanchun*   

  1. Citrus Research Institute,Southwest University/Chinese Academy of Agricultural Sciences,National Citrus Engineering Research Center,Chongqing 400712,China
  • Online:2020-11-25 Published:2020-12-07

摘要: 为挖掘柑橘溃疡病抗性关键基因,对柑橘促分裂原活化蛋白激酶(MAPK)基因家族进行注释和功能域分析,明确了CsMPK1、CsMPK3、CsMPK4、CsMPK6和CsMPK19的组织表达特异性和在抗病品种‘金弹’(Fortunella japonica Swingle)和感病品种‘晚锦橙’(Citrus sinensis Osbeck)中受病原菌(Xanthomonas citri subsp. citri,Xcc)诱导的表达情况;并对CsMPK19进行了生物信息分析。共注释出12个柑橘MAPK基因家族成员,根据系统发育树将其分为3个亚类,均含有促分裂原活化蛋白激酶(Pkinase)功能结构域。其中CsMPK1、CsMPK3、CsMPK4-1和CsMPK6在果实中表达水平较高,CsMPK19在叶片中表达量相对较高。CsMPK1的表达在溃疡病抗(感)品种中均受病原菌强烈诱导,且在感病品种中上调的幅度高于抗病品种;CsMPK3 和CsMPK6仅在感病品种中病原菌处理早期有较强烈的响应;CsMPK4-1和CsMPK4-2的表达在感病品种中受病原菌诱导上调,而在抗病品种中病原菌处理后低于水处理对照;CsMPK19的表达在抗(感)品种中均受病原菌强烈诱导,且在抗病品种中上调幅度更大。克隆了CsMPK19,其序列全长为1 824 bp,编码607个氨基酸,分子量为69 174.36 D,为非分泌性蛋白,其25 ~ 316 aa为典型的Pkinase功能域。晚锦橙和金弹MPK19启动子的顺式作用元件存在较大差异。结果表明柑橘MAPK基因强烈响应溃疡病菌侵染,推测CsMPK19在溃疡病抗性调节中有潜在应用价值。

关键词: 柑橘, 溃疡病, MAPK, 基因克隆, 表达量, 启动子

Abstract: To explore the key genes of citrus canker resistance,the MAPK gene family were annotated,and the functional domain of these genes was analyzed in citrus. The expressing tissue specificity of CsMPK1,CsMPK3,CsMPK4,CsMPK6 and CsMPK19 and their expression in the resistant ‘Jindan’(Fortunella japonica Swingle)and the susceptible‘Wanjincheng’orange(Citrus sinensis Osbeck)induced by Xanthomonas citri subsp. citri(Xcc)were determined. The CsMPK19 was further analyzed by bioinformatics. A total of 12 MAPK gene family members containing Pkinase domain were annotated from the citrus genome,which were divided into 3 subclasses according to the phylogenetic tree. The expression levels of CsMPK1,CsMPK3,CsMPK4-1 and CsMPK6 were relatively high in fruits,while the expression level of CsMPK19 was relatively high in leaves. The expression of CsMPK1 was strongly induced by Xcc in both resistant and susceptible varieties,and the upregulated amplitude was higher in the susceptible variety than in the resistant one. CsMPK3 and CsMPK6 showed strong response only in the early stage of pathogen treatment in susceptible cultivar. The expression of CsMPK4-1 and CsMPK4-2 were up-regulated after Xcc treatment in the susceptible cultivar,but decreased in the resistant cultivar,compared with the water treatment. The expression of CsMPK19 was also strongly induced by Xcc in both resistant and susceptible varieties,while the upregulation was higher in the resistant cultivar. A 1 824 bp coding sequence of CsMPK19 was cloned which encodes a 69 174.36 D protein of 607 amino acids. Bioinformatics analysis indicated that CsMPK19 is a non-secretory protein and the 25–316 aa is a typical Pkinase domain. There are significant differences in the cis-acting elements of the MPK19 promoters between the Wanjincheng orange and the Jindan. These results suggest that MAPK genes strongly respond to Xcc infection,and the CsMPK19 had potential application value in regulation of resistance to citrus canker.

Key words: citrus, canker, MAPK, gene cloning, expression level, promoter

中图分类号: